View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14713_low_30 (Length: 399)
Name: NF14713_low_30
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14713_low_30 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 178 - 399
Target Start/End: Original strand, 45530214 - 45530435
Alignment:
| Q |
178 |
cagtagcccctttatctccattttttgtttcagttccctcattactagctcattattgagcttagaagttccattattattgagcttagaagtttcataa |
277 |
Q |
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| T |
45530214 |
cagtagcccctttatctcgattttttgtttcagttccctcattactagctcattattgagcttagaagttccattattattgagcttagaagtttcataa |
45530313 |
T |
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| Q |
278 |
ttgtcaagagggagagttttatcagctattgttgcagaagtgattacatcaactccatctttgtaacttttgtgtttcgattgtatctccactacttcat |
377 |
Q |
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| T |
45530314 |
ttgtcaagtgggagagttttaacagctattgttgcagaagtgattacatcaactccatctttgtaacttttgtgtttcgattgtatctccactacttcat |
45530413 |
T |
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| Q |
378 |
gtgaaaaagcccatactcttgt |
399 |
Q |
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|||||||||| ||||||||||| |
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| T |
45530414 |
gtgaaaaagctcatactcttgt |
45530435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 17 - 174
Target Start/End: Original strand, 45530004 - 45530161
Alignment:
| Q |
17 |
aattcttaaccctgtcaaccatgccttttcttggactagtcacattgctctcttcaaaaactttctttgacttctcatcctcactagccaatattccatc |
116 |
Q |
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| T |
45530004 |
aattcttaaccctgtcaaccatgccttttcttggactagtcacattgctctcttcaaaaactttctttgacttctcatcctcactagccaatattccatc |
45530103 |
T |
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| Q |
117 |
ctcttttgtcaatggctcgtctttcccttcatgtaaagcttctaaaatcacctaagaa |
174 |
Q |
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| T |
45530104 |
ctcttttgtcaatggctcgtctttcccttcatgtaaagcttctaaaatcacctaagaa |
45530161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 21 - 174
Target Start/End: Original strand, 45542899 - 45543052
Alignment:
| Q |
21 |
cttaaccctgtcaaccatgccttttcttggactagtcacattgctctcttcaaaaactttctttgacttctcatcctcactagccaatattccatcctct |
120 |
Q |
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| T |
45542899 |
cttaaccctgtcaaccattccttttcctgaactattcgcattgctctcttcaagaactttctctgacttctcatcctcactagccaatattccatcttct |
45542998 |
T |
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| Q |
121 |
tttgtcaatggctcgtctttcccttcatgtaaagcttctaaaatcacctaagaa |
174 |
Q |
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| T |
45542999 |
tttttcaatggctcttctttccctttatgtaaagcttctgaaaccacctcagaa |
45543052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 21 - 174
Target Start/End: Original strand, 45548221 - 45548374
Alignment:
| Q |
21 |
cttaaccctgtcaaccatgccttttcttggactagtcacattgctctcttcaaaaactttctttgacttctcatcctcactagccaatattccatcctct |
120 |
Q |
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| T |
45548221 |
cttaaccttgtcaaccatgccttttcctggactattcacattgctctcttcaaacactttgtcagacttctcaacctcactatccaactttccatcctct |
45548320 |
T |
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| Q |
121 |
tttgtcaatggctcgtctttcccttcatgtaaagcttctaaaatcacctaagaa |
174 |
Q |
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||| |||||||||| ||||| |||| || |||| |||| ||||||||| |||| |
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| T |
45548321 |
tttttcaatggctcttcttttcctttattcaaagtttctgaaatcacctcagaa |
45548374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 248 - 348
Target Start/End: Original strand, 45543701 - 45543801
Alignment:
| Q |
248 |
ccattattattgagcttagaagtttcataattgtcaagagggagagttttatcagctattgttgcagaagtgattacatcaactccatctttgtaacttt |
347 |
Q |
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| T |
45543701 |
ccatcattactgagcttagaagtttcatcattttcaaaagggagagttttatcaacttttgttccagaagagattacatcaacttcatctgtgtgacttt |
45543800 |
T |
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| Q |
348 |
t |
348 |
Q |
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| T |
45543801 |
t |
45543801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 348
Target Start/End: Original strand, 45543109 - 45543270
Alignment:
| Q |
182 |
agcccctttatctccattttttgtttcagttccctcattactagctcattattgagcttagaagttccattattattgagcttagaagtttca------t |
275 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| | || ||| |||||||| |||| ||||||||||||||||| | |
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| T |
45543109 |
agcccctttgtctccattttttgtttcagttccctcattacta-ccaat------gct----agttccatcattactgagcttagaagtttcatcatttt |
45543197 |
T |
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| Q |
276 |
aattgtcaagagggagagttttatcagctattgttgcagaagtgattacatcaactccatctttgtaactttt |
348 |
Q |
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| T |
45543198 |
tattttcaagagggagagttttatcaacttttgttccagaagagattacttcaacttcatctgtgtgactttt |
45543270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 57 - 169
Target Start/End: Complemental strand, 7005953 - 7005841
Alignment:
| Q |
57 |
cacattgctctcttcaaaaactttctttgacttctcatcctcactagccaatattccatcctcttttgtcaatggctcgtctttcccttcatgtaaagct |
156 |
Q |
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| T |
7005953 |
cacatagctctcttcacacactttctctgacttctcattctcactacccaattttccatcctcttttttcaaaggctcttctttccctttatgaaaagct |
7005854 |
T |
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| Q |
157 |
tctaaaatcacct |
169 |
Q |
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| T |
7005853 |
tctgaaatcacct |
7005841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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