View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14713_low_35 (Length: 371)
Name: NF14713_low_35
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14713_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 40 - 291
Target Start/End: Complemental strand, 26496597 - 26496345
Alignment:
| Q |
40 |
taagaatgagacttgcctcaagtaagttcttgtgatctttttatagaacaattaaaatgcaaagtagatttcatcaaactgaatgactcatagttgatac |
139 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26496597 |
taagaatgagacttgcctcaagtaagttcttgtgatctttttatagaacaattaaaatgcaaagtagatttcatcaaactgaatgactcatagttgatac |
26496498 |
T |
|
| Q |
140 |
taaatttcaaacaactaaaaatatcacattcaatttctacaattttgaaaccccttctatggctgattccagtacaggtttgactactacttcatacacc |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
26496497 |
taaatttcaaacaactaaaaatatcacattcaatttctacaattttgaaacccattcaatggctgattccagtacaggtttgactactacttcatacatc |
26496398 |
T |
|
| Q |
240 |
tcgtccaaatttgta-acggtcactctatcagacacaaatcaaattggaatac |
291 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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|
| T |
26496397 |
tcgtccaaatttgtatacggtcactctatcagacacaaatcaaatcggaatac |
26496345 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 9e-89; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 41 - 230
Target Start/End: Complemental strand, 47521879 - 47521690
Alignment:
| Q |
41 |
aagaatgagacttgcctcaagtaagttcttgtgatctttttatagaacaattaaaatgcaaagtagatttcatcaaactgaatgactcatagttgatact |
140 |
Q |
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|
||||||||| ||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47521879 |
aagaatgaggcttgcctcaagtaagttcttgtgatttttttatcgaacaattagaatgcaaagtagatttcatcaaactgaatgactcatagttgatact |
47521780 |
T |
|
| Q |
141 |
aaatttcaaacaactaaaaatatcacattcaatttctacaattttgaaaccccttctatggctgattccagtacaggtttgactactact |
230 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
47521779 |
aaatttcaaacaactaaaaatatcacattcaatttctataattttgaaaccccttctatggttgattccagtacaggtttgactactact |
47521690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 246 - 354
Target Start/End: Complemental strand, 47521636 - 47521527
Alignment:
| Q |
246 |
aaatttgta-acggtcactctatcagacacaaatcaaattggaatactaacatcaacattaacaaaaactacacctgaatcaagattatcaccaatttta |
344 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
47521636 |
aaatttgtatacggtcactctatcagacacgaatcaaatcaaaattctaacatcaacattaacaaaatctacaccagaatcaagattatcaccaatttta |
47521537 |
T |
|
| Q |
345 |
ttgtgaaaac |
354 |
Q |
| |
|
| ||||||| |
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|
| T |
47521536 |
taatgaaaac |
47521527 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 47521687 - 47521639
Alignment:
| Q |
176 |
ctacaattttgaaaccccttctatggctgattccagtacaggtttgacta |
225 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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|
| T |
47521687 |
ctacaattttgaaacccct-ctatggctgattccagtacaggtttaacta |
47521639 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 155; Significance: 3e-82; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 40 - 230
Target Start/End: Original strand, 37718781 - 37718970
Alignment:
| Q |
40 |
taagaatgagacttgcctcaagtaagttcttgtgatctttttatagaacaattaaaatgcaaagtagatttcatcaaactgaatgactcatagttgatac |
139 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37718781 |
taagaatgaggcttgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatac |
37718880 |
T |
|
| Q |
140 |
taaatttcaaacaactaaaaatatcacattcaatttctacaattttgaaaccccttctatggctgattccagtacaggtttgactactact |
230 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||| |||||||| |||||||||||||||||||| |
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|
| T |
37718881 |
taaatttcaaacaactaaaaatatcaaattcaatttctataattttgaaacccattctatgactgattcc-gtacaggtttgactactact |
37718970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 246 - 354
Target Start/End: Original strand, 37719006 - 37719115
Alignment:
| Q |
246 |
aaatttgtaa-cggtcactctatcagacacaaatcaaattggaatactaacatcaacattaacaaaaactacacctgaatcaagattatcaccaatttta |
344 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| | ||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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|
| T |
37719006 |
aaatttgtaaacggtcactctatcagacacaaatcaaatcgaaattctaacatcaacattaacaaaatctacaccagaatcaagattatcaccaatttta |
37719105 |
T |
|
| Q |
345 |
ttgtgaaaac |
354 |
Q |
| |
|
| ||||||| |
|
|
| T |
37719106 |
taatgaaaac |
37719115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 247 - 354
Target Start/End: Original strand, 30440426 - 30440533
Alignment:
| Q |
247 |
aatttgta-acggtcactctatcagacacaaatcaaattggaatactaacatcaacattaacaaaaactacacctgaatcaagattatcaccaattttat |
345 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||| || | ||| |||| ||||||| ||||||| ||||||| |||||||||||||||||||| |||| |
|
|
| T |
30440426 |
aatttgtatacgatcactctatcagacacaaatcagatcgaaattataac-tcaacatcaacaaaatctacaccagaatcaagattatcaccaatgttat |
30440524 |
T |
|
| Q |
346 |
tgtgaaaac |
354 |
Q |
| |
|
|||||||| |
|
|
| T |
30440525 |
agtgaaaac |
30440533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 147; Significance: 2e-77; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 40 - 230
Target Start/End: Complemental strand, 4436379 - 4436190
Alignment:
| Q |
40 |
taagaatgagacttgcctcaagtaagttcttgtgatctttttatagaacaattaaaatgcaaagtagatttcatcaaactgaatgactcatagttgatac |
139 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4436379 |
taagaatgaggattgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatac |
4436280 |
T |
|
| Q |
140 |
taaatttcaaacaactaaaaatatcacattcaatttctacaattttgaaaccccttctatggctgattccagtacaggtttgactactact |
230 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||| ||||||||||||| ||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
4436279 |
taaatttcaaacaactaataatatcaaattcaatttctataattttgaaacccattctatgactgattcc-gtacaggtttgactactact |
4436190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 69 - 228
Target Start/End: Complemental strand, 4092582 - 4092423
Alignment:
| Q |
69 |
ttgtgatctttttatagaacaattaaaatgcaaagtagatttcatcaaactgaatgactcatagttgatactaaatttcaaacaactaaaaatatcacat |
168 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
4092582 |
ttgtgatctttttatcgaacaattagaatgcaaagtagatttcatcaaactgaatgactcatggttgatactaaatttcaaacaactaaaaatatcacat |
4092483 |
T |
|
| Q |
169 |
tcaatttctacaattttgaaaccccttctatggctgattccagtacaggtttgactacta |
228 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4092482 |
tcaatttctataattttgaaaccccttctatggctgactccagtacaggtttgactacta |
4092423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 246 - 354
Target Start/End: Complemental strand, 4436152 - 4436043
Alignment:
| Q |
246 |
aaatttgtaa-cggtcactctatcagacacaaatcaaattggaatactaacatcaacattaacaaaaactacacctgaatcaagattatcaccaatttta |
344 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||| ||| ||||||||||||||||||||| ||||| | |||||||||||||||||||||||| |
|
|
| T |
4436152 |
aaatttgtaaacggtcactctatcagacacaaagcaaatcaaaattctaacatcaacattaacaaaatctacatcagaatcaagattatcaccaatttta |
4436053 |
T |
|
| Q |
345 |
ttgtgaaaac |
354 |
Q |
| |
|
| ||||||| |
|
|
| T |
4436052 |
taatgaaaac |
4436043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 264 - 342
Target Start/End: Complemental strand, 4092355 - 4092277
Alignment:
| Q |
264 |
ctatcagacacaaatcaaattggaatactaacatcaacattaacaaaaactacacctgaatcaagattatcaccaattt |
342 |
Q |
| |
|
|||||| ||||||||||||| | ||| |||||||||| |||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
4092355 |
ctatcaaacacaaatcaaatcgaaattctaacatcaatattaacaaaatctacaccagaatcaagattatcaccaattt |
4092277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 40 - 230
Target Start/End: Original strand, 46594459 - 46594648
Alignment:
| Q |
40 |
taagaatgagacttgcctcaagtaagttcttgtgatctttttatagaacaattaaaatgcaaagtagatttcatcaaactgaatgactcatagttgatac |
139 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46594459 |
taagaatgaggattgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatac |
46594558 |
T |
|
| Q |
140 |
taaatttcaaacaactaaaaatatcacattcaatttctacaattttgaaaccccttctatggctgattccagtacaggtttgactactact |
230 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||| ||||||||||||| ||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
46594559 |
taaatttcaaacaactaataatatcaaattcaatttctataattttgaaacccattctatgactgattcc-gtacaggtttgactactact |
46594648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 246 - 354
Target Start/End: Original strand, 46594686 - 46594795
Alignment:
| Q |
246 |
aaatttgtaa-cggtcactctatcagacacaaatcaaattggaatactaacatcaacattaacaaaaactacacctgaatcaagattatcaccaatttta |
344 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||| ||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
46594686 |
aaatttgtaaacggtcactctatcagacacaaagcaaatcaaaattctaacatcaacattaacaaaatctacaccagaatcaagattatcaccaatttta |
46594785 |
T |
|
| Q |
345 |
ttgtgaaaac |
354 |
Q |
| |
|
| ||||||| |
|
|
| T |
46594786 |
taatgaaaac |
46594795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 145
Target Start/End: Complemental strand, 25490221 - 25490131
Alignment:
| Q |
55 |
cctcaagtaagttcttgtgatctttttatagaacaattaaaatgcaaagtagatttcatcaaactgaatgactcatagttgatactaaatt |
145 |
Q |
| |
|
|||||| | |||||| |||||| |||||| ||| ||| |||||||||||| |||||||||| ||||||||| || |||||||| |||| |
|
|
| T |
25490221 |
cctcaacttagttctagtgatccttttatcaaacggttataatgcaaagtagctttcatcaaagtgaatgacttgtaattgatactgaatt |
25490131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 38016306 - 38016358
Alignment:
| Q |
40 |
taagaatgagacttgcctcaagtaagttcttgtgatctttttatagaacaatt |
92 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38016306 |
taagaatgaaatttgcctcaagtaagttcttgtgatctttttattgaacaatt |
38016358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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