View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14713_low_36 (Length: 370)
Name: NF14713_low_36
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14713_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 89 - 245
Target Start/End: Original strand, 9142648 - 9142804
Alignment:
| Q |
89 |
cacgttggtcttttagtttatcaacttcatccctttagggaccaatttgcatagatgagacattcataaaccatgacaatgcaagaaacatatcacatga |
188 |
Q |
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| T |
9142648 |
cacgttggtctcttagtttatcaacttcatccctttagggaccaatttgcatagatgagacattcataaaccatgacaatgcaagaaacatatcacatga |
9142747 |
T |
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| Q |
189 |
acccaattatgcttttactcaattactaattatatgttaagacaattgcattattat |
245 |
Q |
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| T |
9142748 |
acccaattatgcttttactcaattactaactatatgttaagacaattgctttattat |
9142804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 240 - 352
Target Start/End: Original strand, 9142831 - 9142943
Alignment:
| Q |
240 |
tattatttgagaactctaaattgacaattactaatgcaatgtatattcctgttttccataaccgcaatacttgattaagtcatgaaatcttgatgtataa |
339 |
Q |
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| T |
9142831 |
tattatttgagaactctaaattgacaattactaatgcaatgtatattcctgttttccataaccgcaatacttgattaagtcatgaaatcttgatgtataa |
9142930 |
T |
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| Q |
340 |
tataataattatc |
352 |
Q |
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| T |
9142931 |
tataataattatc |
9142943 |
T |
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