View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14713_low_40 (Length: 351)
Name: NF14713_low_40
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14713_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 96 - 342
Target Start/End: Original strand, 38399232 - 38399478
Alignment:
| Q |
96 |
aaataattaggaatagattcactaataagactttggacatttatgatgaatatgcattgatgatatgtttttgatacaataagatcttaagatgcaacgt |
195 |
Q |
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| T |
38399232 |
aaataattatgaatagattcactaataagattttggacatttatgatgaatatgcattgatgatatgtttttgataaaataagatcttaagatgcaacgt |
38399331 |
T |
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| Q |
196 |
ttttcctgccaaaaatgcaggaattaagcagccaacaggaatacttgaagctgaaggcacgttatgaatctctacaacgcactcagaggtaccgatactt |
295 |
Q |
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| T |
38399332 |
ttttcctgccaaaaatgcaggaattaagcagccaacaggaatacttgaagctgaaggcacgttatgaatctctacaacgcactcagaggtaccgatactt |
38399431 |
T |
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| Q |
296 |
gatcatatatacttctaaaataagtacatgattgtagaaaatgatga |
342 |
Q |
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| T |
38399432 |
gatcatatatacttctaaaataagtacatgattgtagaaaataatga |
38399478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 38399183 - 38399237
Alignment:
| Q |
16 |
atgtaatcgatagagatattctactgtatgtaatcggtaaatactctgcaaataa |
70 |
Q |
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| T |
38399183 |
atgtaatcgatagagatattctactgtatgtaatcggtaaatactctgcaaataa |
38399237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 34827629 - 34827580
Alignment:
| Q |
214 |
aggaattaagcagccaacaggaatacttgaagctgaaggcacgttatgaa |
263 |
Q |
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| T |
34827629 |
aggagttaagcagtcaacaagaatatttgaagctgaaggcacgttatgaa |
34827580 |
T |
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