View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14713_low_41 (Length: 348)
Name: NF14713_low_41
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14713_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 10071264 - 10071430
Alignment:
| Q |
1 |
tgttctaataaactttttgacgttttaataaacttcatttaaagtcgaataatcaagaatactctagttcaatctctt-ttaaaataataattgttcaga |
99 |
Q |
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| T |
10071264 |
tgttctaataaactttttaacgttttaataaacttcatttaaagtcgaataatcaagaatactctagttcaatctcttattaaaataataactgttcaga |
10071363 |
T |
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| Q |
100 |
ttttacttacatctcatctctatagattataaggtttcattttgattgaaaaatcaaacggtttaag |
166 |
Q |
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| T |
10071364 |
ttttacttacatctcatctctatagattataaggtctcattttgattgaaaaatcaaacggtttaag |
10071430 |
T |
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Target: chr5; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 192 - 331
Target Start/End: Original strand, 10071465 - 10071604
Alignment:
| Q |
192 |
ttccccactttctgatgtcaacaacaatctccactttagccttctttgggcttagatcaaccaaatatatgattgttgtgttagatttgttttggtatag |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10071465 |
ttccccactttctgatgtcaacaacaatctccactttagccttctttgggcttagatcaaccaaatatatgattgttgtgttagatttgttttggtatag |
10071564 |
T |
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| Q |
292 |
attgtgttggatgttaaaaccagttctaaaatcttcatac |
331 |
Q |
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| T |
10071565 |
attgtgttggatgttaaaaccagttctaaaatcttcatac |
10071604 |
T |
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