View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14713_low_43 (Length: 340)
Name: NF14713_low_43
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14713_low_43 |
 | |
|
| [»] scaffold0394 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 326
Target Start/End: Complemental strand, 52174431 - 52174115
Alignment:
| Q |
10 |
ttctggagccatatatcctatagttcctcttgtaccaagtattgaaacaatactatccttcctttgacaaatttttgctagtccaaaatcagaaattttt |
109 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||| || |||||||||||||| |||||||| |||||| |
|
|
| T |
52174431 |
ttctggcgccatatatcctatagttcctcttgtgccaagtattgacacaacactatccttcctttggcatatttttgctagtccgaaatcagatattttt |
52174332 |
T |
|
| Q |
110 |
ggacaaaagtcttcgtccaaaagaatgttttgaggtttgatatcaagatgcagaatccttgaactacatccttgatgcaagtactctagtcctctagcaa |
209 |
Q |
| |
|
|| ||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
52174331 |
gggcaaaagtcttcatccaaaataatgttttgaggtttgatatcaagatgcaaaatccttgaactacatccttgatgcaagtactctagtcctttagcaa |
52174232 |
T |
|
| Q |
210 |
tgccaagtgtaatttggaaaaaagtgttccaatgaaaatcacaaacagcttgaggaaatccacttttatagatgaacttatccaatgatccttggggcat |
309 |
Q |
| |
|
|||||| || ||||||||| ||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
52174231 |
tgccaattgcaatttggaacaaagtgttccaattaaaatcacaaacagcttcagaaaatccacttttatagatgaactgatccaatgatccttggcgcat |
52174132 |
T |
|
| Q |
310 |
gaactcatatattagtg |
326 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
52174131 |
gaattcatatattagtg |
52174115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 49710886 - 49710780
Alignment:
| Q |
11 |
tctggagccatatatcctatagttcctcttgtaccaagtattgaaacaatactatccttcctttgacaaatttttgctagtccaaaatcagaaatttttg |
110 |
Q |
| |
|
|||||||| ||||||||| ||||| |||| ||||| |||||| ||||| || || || ||| |||| ||||| || ||||||||||| |||||||||| |
|
|
| T |
49710886 |
tctggagcaatatatcctggtgttccccttgcaccaaatattgatacaatgctttcttttcttagacatattttagcaagtccaaaatctgaaatttttg |
49710787 |
T |
|
| Q |
111 |
gacaaaa |
117 |
Q |
| |
|
||||||| |
|
|
| T |
49710786 |
gacaaaa |
49710780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 49683276 - 49683173
Alignment:
| Q |
11 |
tctggagccatatatcctatagttcctcttgtaccaagtattgaaacaatactatccttcctttgacaaatttttgctagtccaaaatcagaaatttttg |
110 |
Q |
| |
|
|||||||| ||||||||| || || |||| ||||| |||||| ||||| || || || ||| |||| ||||| || ||||||||||| |||||||||| |
|
|
| T |
49683276 |
tctggagcaatatatcctggtgtcccccttgcaccaaatattgatacaatgctttcttttcttggacatattttagcaagtccaaaatctgaaatttttg |
49683177 |
T |
|
| Q |
111 |
gaca |
114 |
Q |
| |
|
|||| |
|
|
| T |
49683176 |
gaca |
49683173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 10 - 326
Target Start/End: Original strand, 31595165 - 31595481
Alignment:
| Q |
10 |
ttctggagccatatatcctatagttcctcttgtaccaagtattgaaacaatactatccttcctttgacaaatttttgctagtccaaaatcagaaattttt |
109 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| || ||||||| ||||||||||| ||| ||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
31595165 |
ttctggcgccatatatcctatagttcctcttgtccccggtattgacacaatactatcattcatttgacatatttttgctagtccaaaatcagagattttt |
31595264 |
T |
|
| Q |
110 |
ggacaaaagtcttcgtccaaaagaatgttttgaggtttgatatcaagatgcagaatccttgaactacatccttgatgcaagtactctagtcctctagcaa |
209 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31595265 |
gggcaaaagttttcgtccaaaagaatgttttgaggtttgatatcaagatgcagtatccttgaactacatccttgatgcaagtactctaaacctctagcaa |
31595364 |
T |
|
| Q |
210 |
tgccaagtgtaatttggaaaaaagtgttccaatgaaaatcacaaacagcttgaggaaatccacttttatagatgaacttatccaatgatccttggggcat |
309 |
Q |
| |
|
|||| | | ||||||||| ||||||||| ||| ||||||||||||||| | |||||||||||||||||||||||| || || | |||||||| |||||| |
|
|
| T |
31595365 |
tgccgatagcaatttggaacaaagtgttcgaatcaaaatcacaaacagcgtcaggaaatccacttttatagatgaatttgtctagtgatcctttgggcat |
31595464 |
T |
|
| Q |
310 |
gaactcatatattagtg |
326 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
31595465 |
gaactcatatattagtg |
31595481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 10 - 324
Target Start/End: Original strand, 31608368 - 31608682
Alignment:
| Q |
10 |
ttctggagccatatatcctatagttcctcttgtaccaagtattgaaacaatactatccttcctttgacaaatttttgctagtccaaaatcagaaattttt |
109 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||| || | |||||| |||||||| |||||||||||||| ||||| || |||||||||||||| |||||| |
|
|
| T |
31608368 |
ttctggcgccatatatcctatagttcctcgtgtccccaatattgacacaatactgtccttcctttgacatattttagcaagtccaaaatcagatattttt |
31608467 |
T |
|
| Q |
110 |
ggacaaaagtcttcgtccaaaagaatgttttgaggtttgatatcaagatgcagaatccttgaactacatccttgatgcaagtactctagtcctctagcaa |
209 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
31608468 |
ggacaaaagtcttcatccaaaagaatgttttgaggtttgatatcaagatgtagtatccttgaactacatccttgatgcaagtactcgagacctctagcaa |
31608567 |
T |
|
| Q |
210 |
tgccaagtgtaatttggaaaaaagtgttccaatgaaaatcacaaacagcttgaggaaatccacttttatagatgaacttatccaatgatccttggggcat |
309 |
Q |
| |
|
|||| | | || |||||| ||||||||||||| ||||||||||||||| | |||||||||||| ||||||||||||||||||| ||||||| |||||| |
|
|
| T |
31608568 |
tgccgatagcaacttggaacaaagtgttccaatcaaaatcacaaacagcgtcaggaaatccactcttatagatgaacttatccagggatcctttgggcat |
31608667 |
T |
|
| Q |
310 |
gaactcatatattag |
324 |
Q |
| |
|
| | ||||||||||| |
|
|
| T |
31608668 |
gtattcatatattag |
31608682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 326
Target Start/End: Original strand, 31576108 - 31576424
Alignment:
| Q |
10 |
ttctggagccatatatcctatagttcctcttgtaccaagtattgaaacaatactatccttcctttgacaaatttttgctagtccaaaatcagaaattttt |
109 |
Q |
| |
|
|||||| |||||||||||||| |||||||||| || | |||||| ||||||||||||||| |||| || ||||| ||||||||||||||||| |||||| |
|
|
| T |
31576108 |
ttctggtgccatatatcctattgttcctcttgcccctaatattgacacaatactatccttcttttggcatattttcgctagtccaaaatcagagattttt |
31576207 |
T |
|
| Q |
110 |
ggacaaaagtcttcgtccaaaagaatgttttgaggtttgatatcaagatgcagaatccttgaactacatccttgatgcaagtactctagtcctctagcaa |
209 |
Q |
| |
|
|| ||||| || || ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| |
|
|
| T |
31576208 |
gggcaaaaatcatcatccaaaagaatgttttgaggttttatatcaagatgcagaatccttgaactgcatccttggtgcaagtactctagacctctagcaa |
31576307 |
T |
|
| Q |
210 |
tgccaagtgtaatttggaaaaaagtgttccaatgaaaatcacaaacagcttgaggaaatccacttttatagatgaacttatccaatgatccttggggcat |
309 |
Q |
| |
|
|||||| || |||||||| ||||||||||||| ||||||||||| ||| | ||||||| ||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
31576308 |
tgccaattgctatttggaacaaagtgttccaatcaaaatcacaaatagcgttaggaaattcacttttatagatgaacttatccaatgatccattgggcat |
31576407 |
T |
|
| Q |
310 |
gaactcatatattagtg |
326 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
31576408 |
gaattcatatattagtg |
31576424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 326
Target Start/End: Original strand, 31604774 - 31605090
Alignment:
| Q |
10 |
ttctggagccatatatcctatagttcctcttgtaccaagtattgaaacaatactatccttcctttgacaaatttttgctagtccaaaatcagaaattttt |
109 |
Q |
| |
|
|||||| |||||||||||||| |||||||||| || | |||||| ||||||||||||||| |||| || ||||| ||||||||||||||||| |||||| |
|
|
| T |
31604774 |
ttctggtgccatatatcctattgttcctcttgcccctaatattgacacaatactatccttcttttggcatattttcgctagtccaaaatcagagattttt |
31604873 |
T |
|
| Q |
110 |
ggacaaaagtcttcgtccaaaagaatgttttgaggtttgatatcaagatgcagaatccttgaactacatccttgatgcaagtactctagtcctctagcaa |
209 |
Q |
| |
|
|| ||||| || || ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| |
|
|
| T |
31604874 |
gggcaaaaatcatcatccaaaagaatgttttgaggttttatatcaagatgcagaatccttgaactgcatccttggtgcaagtactctagacctctagcaa |
31604973 |
T |
|
| Q |
210 |
tgccaagtgtaatttggaaaaaagtgttccaatgaaaatcacaaacagcttgaggaaatccacttttatagatgaacttatccaatgatccttggggcat |
309 |
Q |
| |
|
|||||| || |||||||| ||||||||||||| ||||||||||| ||| | ||||||| ||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
31604974 |
tgccaattgctatttggaacaaagtgttccaatcaaaatcacaaatagcgttaggaaattcacttttatagatgaacttatccaatgatccattgggcat |
31605073 |
T |
|
| Q |
310 |
gaactcatatattagtg |
326 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
31605074 |
gaattcatatattagtg |
31605090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 324
Target Start/End: Original strand, 31618378 - 31618692
Alignment:
| Q |
10 |
ttctggagccatatatcctatagttcctcttgtaccaagtattgaaacaatactatccttcctttgacaaatttttgctagtccaaaatcagaaattttt |
109 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||| || | |||||| |||||||||||||||||||| || ||||| |||||||||||||| || |||||| |
|
|
| T |
31618378 |
ttctggtgccatgtatcctatagttcctcttgcccctaatattgacacaatactatccttcctttggcatattttagctagtccaaaatctgagattttt |
31618477 |
T |
|
| Q |
110 |
ggacaaaagtcttcgtccaaaagaatgttttgaggtttgatatcaagatgcagaatccttgaactacatccttgatgcaagtactctagtcctctagcaa |
209 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
31618478 |
ggacaaaaatcttcatccaaaagaatgttttgaggttttatatcaagatgtagaatccttgaactacatccttgatgcaagtactctagacctttagcaa |
31618577 |
T |
|
| Q |
210 |
tgccaagtgtaatttggaaaaaagtgttccaatgaaaatcacaaacagcttgaggaaatccacttttatagatgaacttatccaatgatccttggggcat |
309 |
Q |
| |
|
|||||| || |||| | || ||||||||||||| ||||||||||| || | ||||||| ||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
31618578 |
tgccaattgcaattcgaaacaaagtgttccaatcaaaatcacaaatggcattaggaaattcacttttgtagatgaacttatccaatgatcctttgggcat |
31618677 |
T |
|
| Q |
310 |
gaactcatatattag |
324 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
31618678 |
gaattcatatattag |
31618692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 10 - 326
Target Start/End: Original strand, 31614649 - 31614958
Alignment:
| Q |
10 |
ttctggagccatatatcctatagttcctcttgtaccaagtattgaaacaatactatccttcctttgacaaatttttgctagtccaaaatcagaaattttt |
109 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| | |||||| ||||||||||||||| |||| || ||||| ||||||||||||||||| |||||| |
|
|
| T |
31614649 |
ttctggtgccatatatcctatagttcctcttgtacctaatattgacacaatactatccttcttttggcatattttcgctagtccaaaatcagagattttt |
31614748 |
T |
|
| Q |
110 |
ggacaaaagtcttcgtccaaaagaatgttttgaggtttgatatcaagatgcagaatccttgaactacatccttgatgcaagtactctagtcctctagcaa |
209 |
Q |
| |
|
|| ||||| ||||| |||||||||||||||||||||||| ||||||||| |||||||||||| ||| |||||||||||||||| |||||||| | |
|
|
| T |
31614749 |
gggcaaaaatcttcatccaaaagaatgttttgaggtttggtatcaagatacagaatccttgagcta-------gatgcaagtactctagacctctagcga |
31614841 |
T |
|
| Q |
210 |
tgccaagtgtaatttggaaaaaagtgttccaatgaaaatcacaaacagcttgaggaaatccacttttatagatgaacttatccaatgatccttggggcat |
309 |
Q |
| |
|
|||||| || ||||||||| ||||||||||||| ||||||||||| ||| | ||||||| ||||||| |||||||| ||||||||||||||| || ||| |
|
|
| T |
31614842 |
tgccaattgcaatttggaacaaagtgttccaattaaaatcacaaatagcattaggaaattcacttttgtagatgaaactatccaatgatcctttggacat |
31614941 |
T |
|
| Q |
310 |
gaactcatatattagtg |
326 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
31614942 |
gaattcatatattagtg |
31614958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 10 - 321
Target Start/End: Original strand, 31585518 - 31585829
Alignment:
| Q |
10 |
ttctggagccatatatcctatagttcctcttgtaccaagtattgaaacaatactatccttcctttgacaaatttttgctagtccaaaatcagaaattttt |
109 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| || || ||||| ||| ||||||||||| || | || ||||||||||||||||||||||| |||||| |
|
|
| T |
31585518 |
ttctggtgccatatatcctatagttcctcttgcccctagcattgacacagtactatccttctttcggcatatttttgctagtccaaaatcagatattttt |
31585617 |
T |
|
| Q |
110 |
ggacaaaagtcttcgtccaaaagaatgttttgaggtttgatatcaagatgcagaatccttgaactacatccttgatgcaagtactctagtcctctagcaa |
209 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
31585618 |
ggacaaaaatcttcatccaaaagaatgttttggggtttgatatcaagatgcagaatcctcgaactacatccttgatgcaaatactctaaacctctagcaa |
31585717 |
T |
|
| Q |
210 |
tgccaagtgtaatttggaaaaaagtgttccaatgaaaatcacaaacagcttgaggaaatccacttttatagatgaacttatccaatgatccttggggcat |
309 |
Q |
| |
|
|||||| || ||||||||| ||||||||||||| ||||||| | | ||| | ||||||| ||| ||||||| |||||| |||||||||||| || ||| |
|
|
| T |
31585718 |
tgccaactgcaatttggaacaaagtgttccaatcaaaatcatatatagcattaggaaattggcttctatagataaacttacccaatgatcctttggacat |
31585817 |
T |
|
| Q |
310 |
gaactcatatat |
321 |
Q |
| |
|
||| |||||||| |
|
|
| T |
31585818 |
gaattcatatat |
31585829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 10 - 326
Target Start/End: Original strand, 31541130 - 31541446
Alignment:
| Q |
10 |
ttctggagccatatatcctatagttcctcttgtaccaagtattgaaacaatactatccttcctttgacaaatttttgctagtccaaaatcagaaattttt |
109 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| ||||||| || ||||||||||| |||||||| || | ||| ||||||||||||||||| ||||| |
|
|
| T |
31541130 |
ttctggtgctatatatcctatagttcctcttgtgccaagtaaagacacaatactatcattcctttggcatactttagctagtccaaaatcagagattttg |
31541229 |
T |
|
| Q |
110 |
ggacaaaagtcttcgtccaaaagaatgttttgaggtttgatatcaagatgcagaatccttgaactacatccttgatgcaagtactctagtcctctagcaa |
209 |
Q |
| |
|
|| ||||| | ||| ||||||||||||||||| ||||||||||||||||||| ||| |||||| ||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
31541230 |
gggcaaaaattttcatccaaaagaatgttttgtggtttgatatcaagatgcaaaattcttgaaatacatccttgatgcaagtattctagtcctcgagcaa |
31541329 |
T |
|
| Q |
210 |
tgccaagtgtaatttggaaaaaagtgttccaatgaaaatcacaaacagcttgaggaaatccacttttatagatgaacttatccaatgatccttggggcat |
309 |
Q |
| |
|
| || | || ||||||| | || || ||||||| ||| ||||| ||| | | |||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
31541330 |
ttccgattgcaatttggtacaatgtcttccaatccaaactacaaatagcatcatgaaatccacttttaagaatgaacttatccaatgatcctttgggcaa |
31541429 |
T |
|
| Q |
310 |
gaactcatatattagtg |
326 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
31541430 |
gaactcatatattagtg |
31541446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 26 - 321
Target Start/End: Complemental strand, 31439121 - 31438826
Alignment:
| Q |
26 |
cctatagttcctcttgtaccaagtattgaaacaatactatccttcctttgacaaatttttgctagtccaaaatcagaaatttttggacaaaagtcttcgt |
125 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| ||| || ||| ||||||| ||||| ||||| ||||||||||| |||||||||||||| ||||| | |
|
|
| T |
31439121 |
cctatagttcctcttgtgccaagtagggaaacaacactctctttcttttgacatattttagctagaccaaaatcagatatttttggacaaaaatcttcat |
31439022 |
T |
|
| Q |
126 |
ccaaaagaatgttttgaggtttgatatcaagatgcagaatccttgaactacatccttgatgcaagtactctagtcctctagcaatgccaagtgtaatttg |
225 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| ||| |||||| |||| |||||||| ||||||||||||||||||||||||| || || ||| || |
|
|
| T |
31439021 |
ctaaaagaatgttttgaggtttgatatcaagatgcaaaattcttgaaatacaaccttgatgtaagtactctagtcctctagcaatgctaattgcaatatg |
31438922 |
T |
|
| Q |
226 |
gaaaaaagtgttccaatgaaaatcacaaacagcttgaggaaatccacttttatagatgaacttatccaatgatccttggggcatgaactcatatat |
321 |
Q |
| |
|
||| | |||||||||| |||||||||| ||| | ||||||||||||||||| ||||||||||| ||||| || | || |||||| |||||||| |
|
|
| T |
31438921 |
gaacattgtgttccaatccaaatcacaaatagcatttggaaatccacttttatatatgaacttatctaatgacccattggacatgaattcatatat |
31438826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 326
Target Start/End: Complemental strand, 31572956 - 31572645
Alignment:
| Q |
14 |
ggagccatatatcctatagttcctcttgtaccaagtattgaaacaatactatccttcctttgacaaatttttgctagtccaaaatcagaaatttttggac |
113 |
Q |
| |
|
||||| || |||||||||||||| ||||| |||||||| || |||||||||||||||||||| || |||| ||||||||||||||||| |||||||| | |
|
|
| T |
31572956 |
ggagctatgtatcctatagttccccttgtgccaagtatggacacaatactatccttcctttggcatatttgagctagtccaaaatcagagatttttgggc |
31572857 |
T |
|
| Q |
114 |
aaaagtcttcgtccaaaagaatgttttgaggtttgatatcaagatgcagaatccttgaactacatccttgatgcaagtactctagtcctctagcaatgcc |
213 |
Q |
| |
|
|||| ||||| ||||||||||||||||| ||||| ||||||||||||| |||||||||| |||||||||| |||||||| || ||||||||||| ||||| |
|
|
| T |
31572856 |
aaaaatcttcatccaaaagaatgttttg-ggttttatatcaagatgcaaaatccttgaaatacatccttgttgcaagtattcgagtcctctagctatgcc |
31572758 |
T |
|
| Q |
214 |
aagtgtaatttggaaaaaagtgttccaatgaaaatcacaaacagcttgaggaaatccacttttatagatgaacttatccaatgatccttggggcatgaac |
313 |
Q |
| |
|
| || |||| || | || |||||||||| |||| ||||| || |||||||||||||||| |||||||||| || | ||| || | |||||||| |
|
|
| T |
31572757 |
tattgcaattcggtacaacgtgttccaatccaaattacaaagtgcactaggaaatccacttttaaagatgaacttgtctagtgaaccatttggcatgaat |
31572658 |
T |
|
| Q |
314 |
tcatatattagtg |
326 |
Q |
| |
|
||||||||||||| |
|
|
| T |
31572657 |
tcatatattagtg |
31572645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 23 - 179
Target Start/End: Complemental strand, 33305256 - 33305100
Alignment:
| Q |
23 |
tatcctatagttcctcttgtaccaagtattgaaacaatactatccttcctttgacaaatttttgctagtccaaaatcagaaatttttggacaaaagtctt |
122 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||| |||||||||||||| || |||||||| ||||| |||| |
|
|
| T |
33305256 |
tatcctatagttcctcttgtaccaagtatggatacaatgctatccttcctttgacatatttgagctagtccaaaatctgagatttttgggcaaaaatctt |
33305157 |
T |
|
| Q |
123 |
cgtccaaaagaatgttttgaggtttgatatcaagatgcagaatccttgaactacatc |
179 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||| |||||||||| |||||| |
|
|
| T |
33305156 |
aatccaaaagaatgttttggggtttgacatcaagatgcaaaatccttgaaatacatc |
33305100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 132 - 326
Target Start/End: Original strand, 31532595 - 31532789
Alignment:
| Q |
132 |
gaatgttttgaggtttgatatcaagatgcagaatccttgaactacatccttgatgcaagtactctagtcctctagcaatgccaagtgtaatttggaaaaa |
231 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||| ||||||||| | || ||||||| | || |
|
|
| T |
31532595 |
gaatgttttgtggtttgatatcaagatgcaaaatccttgaattacatccttgatgcaagtattctagtccttgagcaatgccgattgcaatttggtacaa |
31532694 |
T |
|
| Q |
232 |
agtgttccaatgaaaatcacaaacagcttgaggaaatccacttttatagatgaacttatccaatgatccttggggcatgaactcatatattagtg |
326 |
Q |
| |
|
| |||||||| ||| ||||| ||| | ||| || |||||||| |||||| ||||| ||||||||| || |||||| ||||||||||||| |
|
|
| T |
31532695 |
tgcgttccaatctaaactacaaatagcatcaggcaacccacttttgaggatgaatttatctaatgatcctctggacatgaattcatatattagtg |
31532789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 233 - 321
Target Start/End: Complemental strand, 33305068 - 33304980
Alignment:
| Q |
233 |
gtgttccaatgaaaatcacaaacagcttgaggaaatccacttttatagatgaacttatccaatgatccttggggcatgaactcatatat |
321 |
Q |
| |
|
|||||||||| |||||||||| ||| | |||| |||||||| ||| ||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
33305068 |
gtgttccaatccaaatcacaaatagcatcaggagatccacttatatggatgaacttatccaatgatcctttgggcatgaattcatatat |
33304980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 21898334 - 21898213
Alignment:
| Q |
80 |
atttttgctagtccaaaatcagaaatttttggacaaaagtcttcgtccaaaagaatgttttgaggtttgatatcaagatgcagaatccttgaactacatc |
179 |
Q |
| |
|
||||| || ||||||||||||| |||||||| ||||| || || |||| |||||||| || || |||||||| ||||||| |||||| ||| ||||| |
|
|
| T |
21898334 |
attttcgccagtccaaaatcagcgatttttgggcaaaaatcatcatccagcagaatgttgtggggcttgatatccagatgcacaatcctcgaagcacatc |
21898235 |
T |
|
| Q |
180 |
cttgatgcaagtactctagtcc |
201 |
Q |
| |
|
||||||||||||| || ||||| |
|
|
| T |
21898234 |
cttgatgcaagtagtccagtcc |
21898213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 26 - 321
Target Start/End: Complemental strand, 15063468 - 15063173
Alignment:
| Q |
26 |
cctatagttcctcttgtaccaagtattgaaacaatactatccttcctttgacaaatttttgctagtccaaaatcagaaatttttggacaaaagtcttcgt |
125 |
Q |
| |
|
||||||||||||||||| ||||| || || |||| ||| || ||| ||||||| ||||| || || ||||||||||| |||||||| ||||| ||||| | |
|
|
| T |
15063468 |
cctatagttcctcttgtcccaagcatggacacaacactctctttcttttgacatattttagcaagaccaaaatcagatatttttgggcaaaaatcttcat |
15063369 |
T |
|
| Q |
126 |
ccaaaagaatgttttgaggtttgatatcaagatgcagaatccttgaactacatccttgatgcaagtactctagtcctctagcaatgccaagtgtaatttg |
225 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| ||| |||||| |||| |||||||| || |||||||| |||| ||||||||||| | ||||| |
|
|
| T |
15063368 |
ctaaaagaatgttttgaggtttgatatcaagatgcaaaattcttgaaatacaaccttgatgtaaatactctagacctcgagcaatgccaattacgatttg |
15063269 |
T |
|
| Q |
226 |
gaaaaaagtgttccaatgaaaatcacaaacagcttgaggaaatccacttttatagatgaacttatccaatgatccttggggcatgaactcatatat |
321 |
Q |
| |
|
||| || |||||||||| |||||||||| ||| | |||||||||||||| || ||||||||||| |||||||| | || |||||| |||||||| |
|
|
| T |
15063268 |
gaataatgtgttccaatccaaatcacaaatagcatttggaaatccacttttgtatatgaacttatctaatgatccattggacatgaattcatatat |
15063173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 155
Target Start/End: Original strand, 29083976 - 29084098
Alignment:
| Q |
34 |
tcctcttgtaccaagtattgaaacaatactatccttcctttgacaaatttttgctagtccaaaatc--agaaatttttggacaaaagtcttcgtccaaaa |
131 |
Q |
| |
|
|||| |||| |||||||| || |||||||||| ||| |||||| ||||| |||||||||||||| ||| ||||||| ||||| || || ||||||| |
|
|
| T |
29083976 |
tcctattgtgccaagtatagacacaatactatgattctcttgacatattttagctagtccaaaatcttagatttttttgg-caaaaatcgtcatccaaaa |
29084074 |
T |
|
| Q |
132 |
gaatgttttgaggtttgatatcaa |
155 |
Q |
| |
|
|||||||||| ||||||||||||| |
|
|
| T |
29084075 |
gaatgttttggggtttgatatcaa |
29084098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0394 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0394
Description:
Target: scaffold0394; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 26 - 137
Target Start/End: Original strand, 2066 - 2177
Alignment:
| Q |
26 |
cctatagttcctcttgtaccaagtattgaaacaatactatccttcctttgacaaatttttgctagtccaaaatcagaaatttttggacaaaagtcttcgt |
125 |
Q |
| |
|
||||||||||||||||| ||||| || || |||| ||| || ||| ||||||| ||||| || || ||||||||||| |||||||| ||||| ||||| | |
|
|
| T |
2066 |
cctatagttcctcttgtcccaagcatggacacaacactctctttcttttgacatattttagcaagaccaaaatcagatatttttgggcaaaaatcttcat |
2165 |
T |
|
| Q |
126 |
ccaaaagaatgt |
137 |
Q |
| |
|
| |||||||||| |
|
|
| T |
2166 |
ctaaaagaatgt |
2177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 201
Target Start/End: Original strand, 31189590 - 31189709
Alignment:
| Q |
82 |
ttttgctagtccaaaatcagaaatttttggacaaaagtcttcgtccaaaagaatgttttgaggtttgatatcaagatgcagaatccttgaactacatcct |
181 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||| || | || || ||||||||||| || ||||| || || | ||| | ||| |||| |||||||| |
|
|
| T |
31189590 |
ttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttttatgtcgaaatgtaaaattcttgtggtacatcct |
31189689 |
T |
|
| Q |
182 |
tgatgcaagtactctagtcc |
201 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
31189690 |
ctatgcaagtactctagtcc |
31189709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 31145532 - 31145597
Alignment:
| Q |
82 |
ttttgctagtccaaaatcagaaatttttggacaaaagtcttcgtccaaaagaatgttttgaggttt |
147 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||| |||| ||| || ||||||||||| || ||||| |
|
|
| T |
31145532 |
ttttgcaagtccaaaatctgaaatctttggacataagttttcatctaaaagaatgttatgtggttt |
31145597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 31171845 - 31171910
Alignment:
| Q |
82 |
ttttgctagtccaaaatcagaaatttttggacaaaagtcttcgtccaaaagaatgttttgaggttt |
147 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||| |||| ||| || ||||||||||| || ||||| |
|
|
| T |
31171845 |
ttttgcaagtccaaaatctgaaatctttggacataagttttcatctaaaagaatgttatgtggttt |
31171910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 31201383 - 31201432
Alignment:
| Q |
68 |
ttcctttgacaaatttttgctagtccaaaatcagaaatttttggacaaaa |
117 |
Q |
| |
|
|||||| |||||| |||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
31201383 |
ttccttggacaaagttttgcaagtccaaaatctgaaatctttggacaaaa |
31201432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 30955308 - 30955236
Alignment:
| Q |
83 |
tttgctagtccaaaatcagaaatttttggacaaaagtcttcgtccaaaagaatgttttgaggtttgatatcaa |
155 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||| || | ||| || ||||||||||| || ||||| ||||||| |
|
|
| T |
30955308 |
tttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaa |
30955236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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