View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14713_low_46 (Length: 321)
Name: NF14713_low_46
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14713_low_46 |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 34788508 - 34788782
Alignment:
| Q |
18 |
gtttatgagagagctatagctaatgttcctccagctgaggagaagcgatactggcagcgctatatttatttgtggtacgtttgatttgaatgctgttttg |
117 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34788508 |
gtttatgagagagctatagctaatgtacctctagctgaggagaagcgatactggcagcgctatatttatttgtggtacgtttgatttgaatgctgttttg |
34788607 |
T |
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| Q |
118 |
ttgtcggtttgtttatttatcatttagtgattttgcattttctagtggtatttattattttctgcgtgtatcttaggattaattatgcactttatgaaga |
217 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34788608 |
ttgtcggtttgtttatttatcatttagtgatttttcattttctagtggtatttattattttctgcgtgtatcttaggattaattatgcactttatgaaga |
34788707 |
T |
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| Q |
218 |
acttgatgctggagatatggagcgaacaagagatgtgtacaagtaagcagccttttgtgaacttctaagtatttt |
292 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34788708 |
acttgatgctggagatatggagcaaacaagagatgtgtacaagtaagcagccttttgtgaacttctaagtatttt |
34788782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 2292686 - 2292421
Alignment:
| Q |
18 |
gtttatgagagagctatagctaatgttcctccagctgaggagaagcgatactggcagcgctatatttatttgtggtacgtttgatttgaatgctgttttg |
117 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
2292686 |
gtttatgagagagctatagccaatgttcctcctgctgaggagaagcgatactggcagcgctatatttatttgtggtatgtttgatttgaattctgttttg |
2292587 |
T |
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| Q |
118 |
ttgtcggtttgtttatttatcatttagtgattttgcattttctagtggtatttattattt-tctgcgtgtatcttaggattaattatgcactttatgaag |
216 |
Q |
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|| || |||||||||||||| ||||| |||||||||||||| | |||||||||||||||| |||| || || |||||||||||||||||||| ||||||| |
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| T |
2292586 |
ttatctgtttgtttatttattatttattgattttgcatttttttgtggtatttattatttgtctgtgtataacttaggattaattatgcactctatgaag |
2292487 |
T |
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| Q |
217 |
aacttgatgctggagatatggagcgaacaagagatgtgtacaagtaagcagccttttgtgaacttc |
282 |
Q |
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|||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2292486 |
aactcgatgctggagacatggagcgaacaagagacgtgtacaagtaagcagccttttgtgaacttc |
2292421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 2597838 - 2597576
Alignment:
| Q |
18 |
gtttatgagagagctatagctaatgttcctccagctgaggagaagcgatactggcagcgctatatttatttgtggtacgtttgatttgaatgctgttttg |
117 |
Q |
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||||||||||||||||||||||||||||||| ||| || ||||| ||||||||||||| |||||||||| ||||||| ||||||||||||| ||||||| |
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| T |
2597838 |
gtttatgagagagctatagctaatgttcctctagccgatgagaatcgatactggcagcactatatttatctgtggtatgtttgatttgaattttgttttg |
2597739 |
T |
|
| Q |
118 |
ttgtcggtttgtttatttatcatttagtgattttgcattttctagtggtatttattattt-tctgcgtgtatcttaggattaattatgcactttatgaag |
216 |
Q |
| |
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| | |||||||||||||| |||||||||||||||||||||| |||||||||||||||| || ||||| ||| |||||| ||||||||||||||||| |
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| T |
2597738 |
gtagctgtttgtttatttattatttagtgattttgcattttcttgtggtatttattatttgtccatgtgtaactttggattagttatgcactttatgaag |
2597639 |
T |
|
| Q |
217 |
aacttgatgctggagatatggagcgaacaagagatgtgtacaagtaagcagccttttgtgaac |
279 |
Q |
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||||| ||| ||||||||| |||||||||||||| ||||||| |||||||||||||| ||||| |
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| T |
2597638 |
aacttaatgttggagatattgagcgaacaagagacgtgtacaggtaagcagccttttctgaac |
2597576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 258
Target Start/End: Complemental strand, 49279942 - 49279879
Alignment:
| Q |
195 |
attaattatgcactttatgaagaacttgatgctggagatatggagcgaacaagagatgtgtaca |
258 |
Q |
| |
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||||| |||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
49279942 |
attaagtatgcactctatgaagagcttgatgctggagatatggagcgagcaagagatgtgtaca |
49279879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 194 - 258
Target Start/End: Complemental strand, 49276386 - 49276322
Alignment:
| Q |
194 |
gattaattatgcactttatgaagaacttgatgctggagatatggagcgaacaagagatgtgtaca |
258 |
Q |
| |
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|||||||||||||| ||||||||| ||||| || || ||||||||||| ||||||||||||||| |
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| T |
49276386 |
gattaattatgcacgttatgaagagtttgatactagaaatatggagcgagcaagagatgtgtaca |
49276322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 49276460 - 49276428
Alignment:
| Q |
18 |
gtttatgagagagctatagctaatgttcctcca |
50 |
Q |
| |
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|||||||||||||||||| |||||||||||||| |
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| T |
49276460 |
gtttatgagagagctatatctaatgttcctcca |
49276428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 49280017 - 49279985
Alignment:
| Q |
18 |
gtttatgagagagctatagctaatgttcctcca |
50 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
49280017 |
gtttatgagagagctatatctaatgttcctcca |
49279985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 24602216 - 24602253
Alignment:
| Q |
18 |
gtttatgagagagctatagctaatgttcctccagctga |
55 |
Q |
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||||||||||||||| |||||||||||||||| ||||| |
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| T |
24602216 |
gtttatgagagagctgtagctaatgttcctccggctga |
24602253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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