View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14713_low_51 (Length: 305)
Name: NF14713_low_51
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14713_low_51 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 9 - 287
Target Start/End: Complemental strand, 9647337 - 9647059
Alignment:
| Q |
9 |
caagaaaataaagagtgagaataataatatagaaatcttttcaatatgtccaacaagtgcattgagaactaaataagactgaaaaatcgattagaaacta |
108 |
Q |
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| T |
9647337 |
caagaaaataaagagtgagaataataatatagaaatcttttcaatatgtccaacaagtgcattgagaactaaataagactgaaaaatcgattagaaacta |
9647238 |
T |
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| Q |
109 |
taactcttggcagtatcacttccatattgtctcgacataaaagaaaaatattaaatttgcatattaccataatctaagtcatcaaaaaacaacaatgact |
208 |
Q |
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| T |
9647237 |
taactcttggcagtatcacttccatattgtctcgacataaaagaaaaatattaaatttgcatattaccataatctaagtcatcaaaaaacaacaatgact |
9647138 |
T |
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| Q |
209 |
gatccattcatcctagaaaaataacacaccttgaataatcacaacttgctgaaaagagagttgaagtatcaaccataca |
287 |
Q |
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| T |
9647137 |
gatccattcatcctagaaaaattacacaccttgaataatcacaacttgctgaaaagagagttgaaatatcaaccataca |
9647059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 9656295 - 9656135
Alignment:
| Q |
11 |
agaaaataaagagtgagaataataatatagaaatcttttcaatatgtccaacaagtgcattgagaactaaataagactgaaaaatcgattagaaactata |
110 |
Q |
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| T |
9656295 |
agaaaataaagagtgagaataataatatagaaatcttttcaatatgtccaacaagtgcattgagaactaaataagactaaaaaatcgattagaaactata |
9656196 |
T |
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| Q |
111 |
actcttggcagtatcacttccatattgtctcgacataaaagaaaaatattaaatttgcatatt |
173 |
Q |
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| T |
9656195 |
a--cttggcagtatcacttccatattgtccggacataaaagtaaaatattaaatttgcatatt |
9656135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 207 - 287
Target Start/End: Complemental strand, 9656132 - 9656052
Alignment:
| Q |
207 |
ctgatccattcatcctagaaaaataacacaccttgaataatcacaacttgctgaaaagagagttgaagtatcaaccataca |
287 |
Q |
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| T |
9656132 |
ctgatccattcgtcctagaaaaataacacaccttgaataatcacaacttgctgaaaagagagttgaagtatcaaccataca |
9656052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 9618740 - 9618700
Alignment:
| Q |
80 |
aataagactgaaaaatcgattagaaactataactcttggca |
120 |
Q |
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| T |
9618740 |
aataagactaaaaaattgattagaaattataactcttggca |
9618700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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