View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14713_low_54 (Length: 295)

Name: NF14713_low_54
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14713_low_54
NF14713_low_54
[»] chr2 (1 HSPs)
chr2 (1-295)||(15029615-15029922)


Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 15029922 - 15029615
Alignment:
Q  1 tcaagtgtagaatctataccaactgttaagcgctttaccttgaaggaatcagtgatagatggtgtttttaagatcaagggatgcnnnnnnncatgttgat 100  Q
    |||||||||||||||||||||||| |||| | |||||||||||| |||| ||| |||| || ||||||||||||||||||||||       |||||||||    
T  15029922 tcaagtgtagaatctataccaactcttaaactctttaccttgaaagaatgagttataggtgttgtttttaagatcaagggatgcaaaaaaacatgttgat 15029823  T
Q  101 atggttttatgtgagatactagctgcaccacttcactgtaatctttatgataagcactaga---------------attatgatgtataaattcatctca 185  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||    
T  15029822 atggtt--atgtgagatactagctgcaccacttcactgtaatctttatgataagcactagagttttatctctattgattatgatgtataaattcatctca 15029725  T
Q  186 tcaaagttcactaagatggagtaaattgttaattatttatttcaaatcatcatgttataatataaaagaattttcctctgttatatatgattacattttg 285  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15029724 tcaaaattcactaagatggagtaaattgttaattatttatttcaaatcatcatgttataatataaaagaattttcctctgttatatatgattacattttg 15029625  T
Q  286 acaaatcttt 295  Q
    ||||||||||    
T  15029624 acaaatcttt 15029615  T

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