View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14713_low_67 (Length: 245)

Name: NF14713_low_67
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14713_low_67
NF14713_low_67
[»] chr1 (13 HSPs)
chr1 (1-228)||(1815332-1815559)
chr1 (106-228)||(1843474-1843595)
chr1 (106-228)||(1857485-1857606)
chr1 (106-228)||(1869083-1869204)
chr1 (46-106)||(19326856-19326916)
chr1 (43-101)||(19330311-19330370)
chr1 (1-43)||(1486646-1486688)
chr1 (1-47)||(6427550-6427596)
chr1 (1-43)||(17778628-17778670)
chr1 (1-46)||(31694638-31694683)
chr1 (5-45)||(16812635-16812675)
chr1 (1-45)||(18556385-18556429)
chr1 (46-105)||(40524962-40525022)
[»] chr8 (11 HSPs)
chr8 (48-107)||(11686012-11686071)
chr8 (46-106)||(44206277-44206337)
chr8 (46-104)||(19177405-19177463)
chr8 (48-103)||(31343660-31343715)
chr8 (48-106)||(4863904-4863962)
chr8 (1-45)||(15816058-15816102)
chr8 (1-46)||(8343042-8343087)
chr8 (1-46)||(8343402-8343447)
chr8 (1-45)||(13436910-13436954)
chr8 (2-46)||(27213601-27213645)
chr8 (1-45)||(36450694-36450738)
[»] chr4 (7 HSPs)
chr4 (46-106)||(27442661-27442721)
chr4 (1-46)||(11596296-11596341)
chr4 (1-46)||(18513174-18513219)
chr4 (1-45)||(8423658-8423702)
chr4 (1-45)||(23292926-23292970)
chr4 (1-45)||(24343588-24343632)
chr4 (1-45)||(37203327-37203371)
[»] scaffold0655 (2 HSPs)
scaffold0655 (46-107)||(4205-4266)
scaffold0655 (46-106)||(6261-6321)
[»] chr7 (6 HSPs)
chr7 (2-45)||(21568561-21568604)
chr7 (1-45)||(598283-598327)
chr7 (1-46)||(5409770-5409815)
chr7 (1-45)||(21880227-21880271)
chr7 (1-45)||(38804489-38804533)
chr7 (1-41)||(40287306-40287346)
[»] chr2 (7 HSPs)
chr2 (2-45)||(12748743-12748786)
chr2 (46-107)||(39959414-39959475)
chr2 (1-45)||(30404790-30404834)
chr2 (2-45)||(11223793-11223836)
chr2 (1-46)||(30335491-30335536)
chr2 (1-46)||(37419829-37419874)
chr2 (1-45)||(44635568-44635612)
[»] scaffold0123 (1 HSPs)
scaffold0123 (1-45)||(44454-44498)
[»] scaffold0003 (2 HSPs)
scaffold0003 (2-46)||(236913-236957)
scaffold0003 (1-45)||(241680-241724)
[»] chr6 (6 HSPs)
chr6 (1-45)||(7378054-7378098)
chr6 (5-45)||(32839571-32839611)
chr6 (6-45)||(10770607-10770646)
chr6 (1-42)||(9025448-9025489)
chr6 (2-43)||(26178620-26178661)
chr6 (1-44)||(6665287-6665331)
[»] chr3 (7 HSPs)
chr3 (1-45)||(27505326-27505370)
chr3 (2-45)||(12083959-12084002)
chr3 (1-44)||(25211605-25211648)
chr3 (1-46)||(41961578-41961623)
chr3 (1-46)||(49651715-49651760)
chr3 (1-45)||(11610584-11610628)
chr3 (1-45)||(34185052-34185096)
[»] chr5 (4 HSPs)
chr5 (1-46)||(38464312-38464357)
chr5 (1-46)||(43564956-43565001)
chr5 (3-47)||(14873599-14873643)
chr5 (1-45)||(19820328-19820372)
[»] scaffold0168 (1 HSPs)
scaffold0168 (10-46)||(21372-21408)


Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 1815332 - 1815559
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcataggatacaacataattgcaggaaaatcattataactaattatgacaaatattctatt 100  Q
    ||||||||||||| |||||||||||| |||| | ||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||    
T  1815332 cgacaccgggacacgcctaatctgaggagtgaccgtgattcataggatacaacataattgcaggaaaatcattataactaatttcgacaaatattctttt 1815431  T
Q  101 ctatcatcaccaagttcataaatgctagatgatgattcatgaagcaagtagtggactctcctctacattaaggtctgcatttatccaagagtgcttatcc 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1815432 ctatcatcaccaaattcataaatgctagatgatgattcatgaagcaagtagtggactctcctctacattaaggtctgcattgatccaagagtgcttatcc 1815531  T
Q  201 attaacctcattccctccaattccatag 228  Q
    ||||||||||||||||||||||||||||    
T  1815532 attaacctcattccctccaattccatag 1815559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 106 - 228
Target Start/End: Complemental strand, 1843595 - 1843474
Alignment:
Q  106 atcaccaagttcataaatgctagatgatgattcatgaagcaagtagtggactctcctctacattaaggtctgcatttatccaagagtgcttatccattaa 205  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    |||||||||||||||   |||  | || |||||||||||||||| ||||||    
T  1843595 atcaccaggttcataaatgctagatgatgattcatgaagcaagtacct-actctcctctacatttgagtcatctttgatccaagagtgcttattcattaa 1843497  T
Q  206 cctcattccctccaattccatag 228  Q
    |||||||||||||||||||||||    
T  1843496 cctcattccctccaattccatag 1843474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 106 - 228
Target Start/End: Complemental strand, 1857606 - 1857485
Alignment:
Q  106 atcaccaagttcataaatgctagatgatgattcatgaagcaagtagtggactctcctctacattaaggtctgcatttatccaagagtgcttatccattaa 205  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    |||||||||||||||   |||  | || |||||||||||||||| ||||||    
T  1857606 atcaccaggttcataaatgctagatgatgattcatgaagcaagtacct-actctcctctacatttgagtcatctttgatccaagagtgcttattcattaa 1857508  T
Q  206 cctcattccctccaattccatag 228  Q
    |||||||||||||||||||||||    
T  1857507 cctcattccctccaattccatag 1857485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 106 - 228
Target Start/End: Complemental strand, 1869204 - 1869083
Alignment:
Q  106 atcaccaagttcataaatgctagatgatgattcatgaagcaagtagtggactctcctctacattaaggtctgcatttatccaagagtgcttatccattaa 205  Q
    ||||||| ||||||||| ||||||||||||||||||||||||| |  | |||||||||||||||   |||  |||| |||||||||||||||| ||||||    
T  1869204 atcaccaggttcataaaagctagatgatgattcatgaagcaagaaccg-actctcctctacatttgagtcatcattgatccaagagtgcttattcattaa 1869106  T
Q  206 cctcattccctccaattccatag 228  Q
    |||||||||||||||||||||||    
T  1869105 cctcattccctccaattccatag 1869083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 19326916 - 19326856
Alignment:
Q  46 gatacaacataattgcaggaaaatcattataactaattatgacaaatattctattctatca 106  Q
    |||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||    
T  19326916 gatacaacataattacaggaaaataattataactaattatgactaatattctattctatca 19326856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 101
Target Start/End: Complemental strand, 19330370 - 19330311
Alignment:
Q  43 taggatacaacataattgcagg-aaaatcattataactaattatgacaaatattctattc 101  Q
    ||||||||||||||||| |||| ||||| |||||| ||||||||||| |||||| |||||    
T  19330370 taggatacaacataattacagggaaaataattatacctaattatgactaatattttattc 19330311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 1486688 - 1486646
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcat 43  Q
    ||||||||||||| |||||||| ||| ||||||||||||||||    
T  1486688 cgacaccgggacacgcctaatccgaggagtgtctgtgcttcat 1486646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 6427550 - 6427596
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatagga 47  Q
    ||||||||||||| |||||||||||  |||||| |||||||||||||    
T  6427550 cgacaccgggacacgcctaatctgatgagtgtccgtgcttcatagga 6427596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 17778628 - 17778670
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcat 43  Q
    |||||||||||||||||||||| |||||||||  |||||||||    
T  17778628 cgacaccgggacatgcctaatccgagaagtgttcgtgcttcat 17778670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 31694683 - 31694638
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatagg 46  Q
    ||||||||| ||| |||||||||||| |||||| ||||||||||||    
T  31694683 cgacaccggaacacgcctaatctgaggagtgtccgtgcttcatagg 31694638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 16812635 - 16812675
Alignment:
Q  5 accgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||||| |||||||||||| |||||| |||||||||||    
T  16812635 accgggacacgcctaatctgaggagtgtccgtgcttcatag 16812675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18556429 - 18556385
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    |||||| |||||| |||||||| |||||||||| |||||||||||    
T  18556429 cgacactgggacacgcctaatccgagaagtgtccgtgcttcatag 18556385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 40524962 - 40525022
Alignment:
Q  46 gatacaacataattgcaggaaaatcattataactaattatgac-aaatattctattctatc 105  Q
    ||||||||||||||  |||||||| ||||||   ||||||||| |||||||||||||||||    
T  40524962 gatacaacataattataggaaaataattatagtcaattatgacaaaatattctattctatc 40525022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 11686012 - 11686071
Alignment:
Q  48 tacaacataattgcaggaaaatcattataactaattatgacaaatattctattctatcat 107  Q
    |||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||    
T  11686012 tacaacataattacagggaaatcattaaaactaattatgacaaatattctattctatcat 11686071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 44206277 - 44206337
Alignment:
Q  46 gatacaacataattgcaggaaaatcattataactaattatgacaaatattctattctatca 106  Q
    |||||||||||||| ||||||||| |||||||||||||||||| |||| ||||||||||||    
T  44206277 gatacaacataattacaggaaaataattataactaattatgactaatactctattctatca 44206337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 19177463 - 19177405
Alignment:
Q  46 gatacaacataattgcaggaaaatcattataactaattatgacaaatattctattctat 104  Q
    ||||||||||||||  |||||||| |||||||||||||||||| |||||||||||||||    
T  19177463 gatacaacataattagaggaaaataattataactaattatgactaatattctattctat 19177405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 103
Target Start/End: Complemental strand, 31343715 - 31343660
Alignment:
Q  48 tacaacataattgcaggaaaatcattataactaattatgacaaatattctattcta 103  Q
    |||||||||||| | || ||||||||| |||||||||||||||||||| |||||||    
T  31343715 tacaacataattacggggaaatcattaaaactaattatgacaaatattatattcta 31343660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 4863904 - 4863962
Alignment:
Q  48 tacaacataattgcaggaaaatcattataactaattatgacaaatattctattctatca 106  Q
    |||| ||||||| |||| ||||||||| |||||||||||  ||||||||||||||||||    
T  4863904 tacagcataattacagggaaatcattaaaactaattatggtaaatattctattctatca 4863962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 15816102 - 15816058
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||||||||| |||||||| |||||||||| |||||||||||    
T  15816102 cgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 15816058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 8343042 - 8343087
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatagg 46  Q
    ||||||||||||| |||||||| ||  |||||||||||||||||||    
T  8343042 cgacaccgggacacgcctaatccgaagagtgtctgtgcttcatagg 8343087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 8343402 - 8343447
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatagg 46  Q
    ||||||||||||| |||||||| ||  |||||||||||||||||||    
T  8343402 cgacaccgggacacgcctaatccgaagagtgtctgtgcttcatagg 8343447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 13436954 - 13436910
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||||||||| ||||||||  || ||||||||||||||||||    
T  13436954 cgacaccgggacacgcctaatccaaggagtgtctgtgcttcatag 13436910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 27213601 - 27213645
Alignment:
Q  2 gacaccgggacatgcctaatctgagaagtgtctgtgcttcatagg 46  Q
    |||||||||||| | |||||| |||||||||| ||||||||||||    
T  27213601 gacaccgggacacggctaatccgagaagtgtccgtgcttcatagg 27213645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 36450738 - 36450694
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||| ||||| |||||||| ||| ||||||||||||||||||    
T  36450738 cgacaccaggacacgcctaatccgaggagtgtctgtgcttcatag 36450694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 27442661 - 27442721
Alignment:
Q  46 gatacaacataattgcaggaaaatcattataactaattatgacaaatattctattctatca 106  Q
    |||||| ||||||| ||||||||| |||||||||||||||||| |||||||||||||||||    
T  27442661 gatacagcataattacaggaaaataattataactaattatgactaatattctattctatca 27442721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 11596341 - 11596296
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatagg 46  Q
    ||||| ||||||| |||||||||||| |||||| ||||||||||||    
T  11596341 cgacatcgggacacgcctaatctgaggagtgtccgtgcttcatagg 11596296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 18513219 - 18513174
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatagg 46  Q
    ||||||| ||||| |||||||||||| |||||| ||||||||||||    
T  18513219 cgacaccaggacacgcctaatctgaggagtgtccgtgcttcatagg 18513174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 8423702 - 8423658
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||||||||| |||||||| |||||||||| |||| ||||||    
T  8423702 cgacaccgggacacgcctaatcggagaagtgtccgtgcgtcatag 8423658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 23292970 - 23292926
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||||||||| |||||||| ||| |||||| |||||||||||    
T  23292970 cgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 23292926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 24343588 - 24343632
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||||||||| ||||| |||||| |||||| |||||||||||    
T  24343588 cgacaccgggacacgcctattctgaggagtgtccgtgcttcatag 24343632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 37203327 - 37203371
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||||||||| | |||||| |||||||||| |||||||||||    
T  37203327 cgacaccgggacacgtctaatccgagaagtgtccgtgcttcatag 37203371  T

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Target: scaffold0655 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 4205 - 4266
Alignment:
Q  46 gatacaacataattgcaggaaaatcattataactaattatgacaaatattctattctatcat 107  Q
    |||||||||||||| |||| |||| |||||| | ||||||||||||||||||||||||||||    
T  4205 gatacaacataattacagggaaataattatagccaattatgacaaatattctattctatcat 4266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 6261 - 6321
Alignment:
Q  46 gatacaacataattgcaggaaaatcattataactaattatgacaaatattctattctatca 106  Q
    |||||||||||||| |||| |||| |||||| | |||||| ||||||||||||||||||||    
T  6261 gatacaacataattacagggaaataattatagccaattattacaaatattctattctatca 6321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 21568604 - 21568561
Alignment:
Q  2 gacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||    
T  21568604 gacaccgggacatgcttaatctgaggagtgtctgtgcttcatag 21568561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 598283 - 598327
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||||||||| |||||||| |||||||||| |||||||||||    
T  598283 cgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 598327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 5409815 - 5409770
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatagg 46  Q
    ||||||||||||| |||||||| ||| |||||| ||||||||||||    
T  5409815 cgacaccgggacacgcctaatccgaggagtgtccgtgcttcatagg 5409770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 21880227 - 21880271
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||| ||||| |||||||| |||||||||| |||||||||||    
T  21880227 cgacaccaggacacgcctaatccgagaagtgtccgtgcttcatag 21880271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 38804533 - 38804489
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    |||| ||||||||||||||||| ||| ||||| ||||||||||||    
T  38804533 cgacgccgggacatgcctaatccgaggagtgtatgtgcttcatag 38804489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 40287346 - 40287306
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttc 41  Q
    |||||||||||||||||||||| ||| |||||| |||||||    
T  40287346 cgacaccgggacatgcctaatccgaggagtgtccgtgcttc 40287306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 12748743 - 12748786
Alignment:
Q  2 gacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    |||||||||||||||||||| |||| ||||||||||||||||||    
T  12748743 gacaccgggacatgcctaatttgaggagtgtctgtgcttcatag 12748786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 39959475 - 39959414
Alignment:
Q  46 gatacaacataattgcaggaaaatcattataactaattatgacaaatattctattctatcat 107  Q
    |||||| ||||||| ||| | ||||||||||| || | ||||||||||||||||||||||||    
T  39959475 gatacatcataattacagaataatcattataattagtcatgacaaatattctattctatcat 39959414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 30404834 - 30404790
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||| ||||||||||||||||||||| || ||||||||||||    
T  30404834 cgacaccaggacatgcctaatctgagaagcgtttgtgcttcatag 30404790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 11223836 - 11223793
Alignment:
Q  2 gacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    |||||||||||| |||||||||||| |||||| |||||||||||    
T  11223836 gacaccgggacacgcctaatctgaggagtgtccgtgcttcatag 11223793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 30335491 - 30335536
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatagg 46  Q
    |||||| |||| |||||||||||||||| ||| |||||||||||||    
T  30335491 cgacactgggatatgcctaatctgagaaatgtatgtgcttcatagg 30335536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 37419829 - 37419874
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatagg 46  Q
    ||||||||||||| |||||||| ||| |||||| ||||||||||||    
T  37419829 cgacaccgggacacgcctaatccgaggagtgtccgtgcttcatagg 37419874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 44635568 - 44635612
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    |||||||| |||| |||||||||||| |||||| |||||||||||    
T  44635568 cgacaccgagacacgcctaatctgaggagtgtccgtgcttcatag 44635612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 44498 - 44454
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    |||||| ||||||||  ||||||||||||||||||||||||||||    
T  44498 cgacactgggacatggttaatctgagaagtgtctgtgcttcatag 44454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 236957 - 236913
Alignment:
Q  2 gacaccgggacatgcctaatctgagaagtgtctgtgcttcatagg 46  Q
    ||||||||||||  ||||||||||| |||||||||||||||||||    
T  236957 gacaccgggacacacctaatctgaggagtgtctgtgcttcatagg 236913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 241680 - 241724
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||||||||| |||||||| |||||||||| |||||||||||    
T  241680 cgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 241724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 7378054 - 7378098
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||||||||| | ||||||||||||||||| |||||||||||    
T  7378054 cgacaccgggacacggctaatctgagaagtgtccgtgcttcatag 7378098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 32839611 - 32839571
Alignment:
Q  5 accgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||||| |||||||| ||||||||||||||||||||||    
T  32839611 accgggacacgcctaatccgagaagtgtctgtgcttcatag 32839571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 10770646 - 10770607
Alignment:
Q  6 ccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||||||||||||||||| |||||| |||||||||||    
T  10770646 ccgggacatgcctaatctgaggagtgtccgtgcttcatag 10770607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 9025489 - 9025448
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttca 42  Q
    ||||||||||||| |||||||| |||||||||| ||||||||    
T  9025489 cgacaccgggacacgcctaatccgagaagtgtccgtgcttca 9025448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 26178661 - 26178620
Alignment:
Q  2 gacaccgggacatgcctaatctgagaagtgtctgtgcttcat 43  Q
    |||||||||||| |||||||| ||| ||||||||||||||||    
T  26178661 gacaccgggacacgcctaatcggaggagtgtctgtgcttcat 26178620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 6665287 - 6665331
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtc-tgtgcttcata 44  Q
    |||||| ||||||||||||||| |||||||||| |||||||||||    
T  6665287 cgacacggggacatgcctaatccgagaagtgtcttgtgcttcata 6665331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27505326 - 27505370
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    |||||||||||||||||||||| ||| |||||| |||||||||||    
T  27505326 cgacaccgggacatgcctaatccgaggagtgtccgtgcttcatag 27505370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 12083959 - 12084002
Alignment:
Q  2 gacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    |||||| |||| ||||||||||||| ||||||||||||||||||    
T  12083959 gacacctggacgtgcctaatctgaggagtgtctgtgcttcatag 12084002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 25211605 - 25211648
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcata 44  Q
    ||||||| ||||| |||||||||||||||||| |||||||||||    
T  25211605 cgacaccaggacacgcctaatctgagaagtgtttgtgcttcata 25211648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 41961623 - 41961578
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatagg 46  Q
    |||||| |||||| |||||||| |||||||||| ||||||||||||    
T  41961623 cgacactgggacacgcctaatccgagaagtgtccgtgcttcatagg 41961578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 49651760 - 49651715
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatagg 46  Q
    |||||||||||||  ||||||| |||||||||| ||||||||||||    
T  49651760 cgacaccgggacacacctaatccgagaagtgtccgtgcttcatagg 49651715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11610584 - 11610628
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||| ||||||| |||||||||||| |||||| |||||||||||    
T  11610584 cgacatcgggacacgcctaatctgaggagtgtccgtgcttcatag 11610628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 34185096 - 34185052
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||||||||| |||||||| ||| |||||| |||||||||||    
T  34185096 cgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 34185052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 38464357 - 38464312
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatagg 46  Q
    |||||||||||||  ||||||| ||| |||||||||||||||||||    
T  38464357 cgacaccgggacacacctaatccgaggagtgtctgtgcttcatagg 38464312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 43564956 - 43565001
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatagg 46  Q
    |||| |||||||| |||||||| |||||||||| ||||||||||||    
T  43564956 cgacgccgggacacgcctaatccgagaagtgtccgtgcttcatagg 43565001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 14873599 - 14873643
Alignment:
Q  3 acaccgggacatgcctaatctgagaagtgtctgtgcttcatagga 47  Q
    ||||||||||| |||||||| ||| |||||| |||||||||||||    
T  14873599 acaccgggacacgcctaatccgaggagtgtccgtgcttcatagga 14873643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 19820372 - 19820328
Alignment:
Q  1 cgacaccgggacatgcctaatctgagaagtgtctgtgcttcatag 45  Q
    ||||||||||||| |||||||| ||| |||||| |||||||||||    
T  19820372 cgacaccgggacacgcctaatcagaggagtgtccgtgcttcatag 19820328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 21372 - 21408
Alignment:
Q  10 gacatgcctaatctgagaagtgtctgtgcttcatagg 46  Q
    |||| |||||||| |||||||||||||||||||||||    
T  21372 gacacgcctaatccgagaagtgtctgtgcttcatagg 21408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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