View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14713_low_68 (Length: 245)

Name: NF14713_low_68
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14713_low_68
NF14713_low_68
[»] chr7 (13 HSPs)
chr7 (10-243)||(31575866-31576099)
chr7 (7-243)||(31604532-31604765)
chr7 (10-245)||(31608126-31608361)
chr7 (13-242)||(31594929-31595155)
chr7 (10-245)||(31618139-31618371)
chr7 (12-242)||(31614412-31614639)
chr7 (12-234)||(31532267-31532489)
chr7 (10-243)||(31585276-31585509)
chr7 (10-234)||(31540891-31541112)
chr7 (82-238)||(33305283-33305439)
chr7 (82-236)||(31572976-31573124)
chr7 (83-241)||(31439148-31439306)
chr7 (175-227)||(21898417-21898469)
[»] chr1 (2 HSPs)
chr1 (10-245)||(52174438-52174670)
chr1 (196-236)||(49728741-49728781)
[»] chr4 (1 HSPs)
chr4 (84-241)||(15063495-15063652)
[»] scaffold0394 (1 HSPs)
scaffold0394 (84-241)||(1882-2039)


Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 10 - 243
Target Start/End: Original strand, 31575866 - 31576099
Alignment:
Q  10 agactcaccataataatctttctaaccatatcattttcttcctctgacgatgtcatacagttaaaaaggttattattaccttgctcaagatccttataaa 109  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31575866 agactcaccaaagtaatctttctaaccatatcattttcttcctctgacgatgtcatacagttaaaaaggttattattaccttgctcaagatccttataaa 31575965  T
Q  110 tccaatctggaaaatacatttcagaagtacacgaccctccagtgtcatagttcttctttcctccgatcatttcaagaatcaacatgccataactatatac 209  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31575966 tccaatctggaaaatacatttccggagtacacgaccctccagtgtcatagttcttccttcctccgatcatttcaagaatcaacatgccataactatatac 31576065  T
Q  210 atcagatttgtaagaaacaccaccaaatgctcta 243  Q
    |||||||||||||||||| |||||||||| ||||    
T  31576066 atcagatttgtaagaaactccaccaaatgatcta 31576099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 7 - 243
Target Start/End: Original strand, 31604532 - 31604765
Alignment:
Q  7 cacagactcaccataataatctttctaaccatatcattttcttcctctgacgatgtcatacagttaaaaaggttattattaccttgctcaagatccttat 106  Q
    ||||||||||||| | |||||||||| |||||||||||||||||||| ||   ||||  ||| || |||||   | ||||||||||||||||||||||||    
T  31604532 cacagactcaccaaagtaatctttctgaccatatcattttcttcctccgagactgtcgaacaatttaaaag---agtattaccttgctcaagatccttat 31604628  T
Q  107 aaatccaatctggaaaatacatttcagaagtacacgaccctccagtgtcatagttcttctttcctccgatcatttcaagaatcaacatgccataactata 206  Q
    |||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31604629 aaatccaatctggaaagtacatttcagaagtacatgacccgccagtgtcgtagttcttccttcctccgatcatttcaagaatcaacatgccataactata 31604728  T
Q  207 tacatcagatttgtaagaaacaccaccaaatgctcta 243  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  31604729 tacatcagatttgtaagaaactccaccaaatgatcta 31604765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 10 - 245
Target Start/End: Original strand, 31608126 - 31608361
Alignment:
Q  10 agactcaccataataatctttctaaccatatcattttcttcctctgacgatgtcatacagttaaaaaggttattattaccttgctcaagatccttataaa 109  Q
    |||||||||||| |||||||||||||||||||||||||||||  |||   |||||  |  || ||||   |||  |||||||||||||||||||||||||    
T  31608126 agactcaccatagtaatctttctaaccatatcattttcttccgttgagattgtcaacccatttaaaacagtatggttaccttgctcaagatccttataaa 31608225  T
Q  110 tccaatctggaaaatacatttcagaagtacacgaccctccagtgtcatagttcttctttcctccgatcatttcaagaatcaacatgccataactatatac 209  Q
    |||| |||||||| ||||||||||||||||| ||||| |||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  31608226 tccagtctggaaagtacatttcagaagtacatgacccgccagtgtcgtagttcttccttcctccaatcatttcaagaatcaacatgccataactatatac 31608325  T
Q  210 atcagatttgtaagaaacaccaccaaatgctctact 245  Q
    ||||||||||||||||||||||||||||||||||||    
T  31608326 atcagatttgtaagaaacaccaccaaatgctctact 31608361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 31594929 - 31595155
Alignment:
Q  13 ctcaccataataatctttctaaccatatcattttcttcctctgacgatgtcatacagttaaaaaggttattattaccttgctcaagatccttataaatcc 112  Q
    ||||||||| |||||||| |||||||||||||||||||||||||   ||||| | | || |||||   || |||||||||||||||||||||||||||||    
T  31594929 ctcaccatagtaatctttttaaccatatcattttcttcctctgaaattgtcaaagaatttaaaag---atcattaccttgctcaagatccttataaatcc 31595025  T
Q  113 aatctggaaaatacatttcagaagtacacgaccctccagtgtcatagttcttctttcctccgatcatttcaagaatcaacatgccataactatatacatc 212  Q
    | |||||||| ||||||||||||||||||||||||||||| | |||||||||  ||||||| |||||||||||||||||||| |||||||| ||||||||    
T  31595026 agtctggaaagtacatttcagaagtacacgaccctccagtttgatagttctttcttcctccaatcatttcaagaatcaacataccataactgtatacatc 31595125  T
Q  213 agatttgtaagaaacaccaccaaatgctct 242  Q
    ||||||||||||||||||||||||||||||    
T  31595126 agatttgtaagaaacaccaccaaatgctct 31595155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 10 - 245
Target Start/End: Original strand, 31618139 - 31618371
Alignment:
Q  10 agactcaccataataatctttctaaccatatcattttcttcctctgacgatgtcatacagttaaaaaggttattattaccttgctcaagatccttataaa 109  Q
    |||||||||| | |||||||||| | |||||||||||||||||| ||   |||   ||| || |||||   | |||| ||||||||||||||||||||||    
T  31618139 agactcaccaaagtaatctttctgatcatatcattttcttcctccgagattgttgaacaatttaaaag---agtattcccttgctcaagatccttataaa 31618235  T
Q  110 tccaatctggaaaatacatttcagaagtacacgaccctccagtgtcatagttcttctttcctccgatcatttcaagaatcaacatgccataactatatac 209  Q
    ||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31618236 tccaatctggaaagtacatttcagaagtacatgaccctcccgtgtcgtagttcttccttcctccgatcatttcaagaatcaacatgccataactatatac 31618335  T
Q  210 atcagatttgtaagaaacaccaccaaatgctctact 245  Q
    ||||||| |||| ||||| |||||||| ||||||||    
T  31618336 atcagatctgtacgaaactccaccaaacgctctact 31618371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 12 - 242
Target Start/End: Original strand, 31614412 - 31614639
Alignment:
Q  12 actcaccataataatctttctaaccatatcattttcttcctctgacgatgtcatacagttaaaaaggttattattaccttgctcaagatccttataaatc 111  Q
    |||||||| | | |||||||||| |||||||||||||||||||||   ||||| ||| || |||||  | |||||   ||||||||||| ||||||||||    
T  31614412 actcaccaaagtgatctttctaatcatatcattttcttcctctgagattgtcaaacaatttaaaagagtgttatt---ttgctcaagattcttataaatc 31614508  T
Q  112 caatctggaaaatacatttcagaagtacacgaccctccagtgtcatagttcttctttcctccgatcatttcaagaatcaacatgccataactatatacat 211  Q
    ||||||||||| |||||||||||||| || |||||||||||||||||||||||  ||||||| |||||||||||||||||||| ||||||||||||||||    
T  31614509 caatctggaaagtacatttcagaagtgcatgaccctccagtgtcatagttctttcttcctccaatcatttcaagaatcaacattccataactatatacat 31614608  T
Q  212 cagatttgtaagaaacaccaccaaatgctct 242  Q
    |||||||||||||||| || |||||||||||    
T  31614609 cagatttgtaagaaactccgccaaatgctct 31614639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 12 - 234
Target Start/End: Original strand, 31532267 - 31532489
Alignment:
Q  12 actcaccataataatctttctaaccatatcattttcttcctctgacgatgtcatacagttaaaaaggttattattaccttgctcaagatccttataaatc 111  Q
    |||||||||| |||||||||| |||||||||||||||||||||||   |   | | | || | |||||||||||||||||| ||||||||||||||||||    
T  31532267 actcaccatagtaatctttctcaccatatcattttcttcctctgaattttctaaataattcacaaggttattattaccttgttcaagatccttataaatc 31532366  T
Q  112 caatctggaaaatacatttcagaagtacacgaccctccagtgtcatagttcttctttcctccgatcatttcaagaatcaacatgccataactatatacat 211  Q
    || || ||||| ||||||||||||||||| ||||||||||||||||| |||||  ||||||| |||||||| ||||| ||||| |||||||| |||||||    
T  31532367 cagtcaggaaagtacatttcagaagtacatgaccctccagtgtcataattctttcttcctccaatcatttctagaattaacatcccataactgtatacat 31532466  T
Q  212 cagatttgtaagaaacaccacca 234  Q
    |||| |||| |||||| ||||||    
T  31532467 cagacttgtgagaaactccacca 31532489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 10 - 243
Target Start/End: Original strand, 31585276 - 31585509
Alignment:
Q  10 agactcaccataataatctttctaaccatatcattttcttcctctgacgatgtcatacagttaaaaaggttattattaccttgctcaagatccttataaa 109  Q
    ||||| |||||| |||||||||||||||| ||||||||||| || ||   ||||| ||| || |||||    | ||||||||||||||||||||||||||    
T  31585276 agacttaccatagtaatctttctaaccatgtcattttcttcttcggagattgtcaaacaatttaaaagaggttcattaccttgctcaagatccttataaa 31585375  T
Q  110 tccaatctggaaaatacatttcagaagtacacgaccctccagtgtcatagttcttctttcctccgatcatttcaagaatcaacatgccataactatatac 209  Q
    ||||||||||||| ||||||||||||| ||| || ||||| ||||| ||||||||| | |||||||| ||||| ||||||| ||||||||||||||| ||    
T  31585376 tccaatctggaaagtacatttcagaagcacatgaacctcctgtgtcgtagttcttcctacctccgataatttctagaatcagcatgccataactatacac 31585475  T
Q  210 atcagatttgtaagaaacaccaccaaatgctcta 243  Q
    |||||| |||| |||||| |||||||| ||||||    
T  31585476 atcagacttgtgagaaactccaccaaaggctcta 31585509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 10 - 234
Target Start/End: Original strand, 31540891 - 31541112
Alignment:
Q  10 agactcaccataataatctttctaaccatatcattttcttcctctgacgatgtcatacagttaaaaaggttattattaccttgctcaagatccttataaa 109  Q
    |||||||||||| ||||| |||| ||||||||||||||||||| |||   ||  | ||| |||  ||||||||||    |||||||||||||||||||||    
T  31540891 agactcaccatagtaatcattcttaccatatcattttcttcctttgagtttgctaaacaattagcaaggttattag---cttgctcaagatccttataaa 31540987  T
Q  110 tccaatctggaaaatacatttcagaagtacacgaccctccagtgtcatagttcttctttcctccgatcatttcaagaatcaacatgccataactatatac 209  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||| |||||  |||| || | |||||| ||||| ||||| ||||||||||||||    
T  31540988 tccaatctggaaaacacatttcagaagtacatgaccctccagtgtcataattctttcttcccccaaccatttctagaattaacataccataactatatac 31541087  T
Q  210 atcagatttgtaagaaacaccacca 234  Q
    |||||| || | |||||| ||||||    
T  31541088 atcagacttatgagaaactccacca 31541112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 82 - 238
Target Start/End: Complemental strand, 33305439 - 33305283
Alignment:
Q  82 ttattaccttgctcaagatccttataaatccaatctggaaaatacatttcagaagtacacgaccctccagtgtcatagttcttctttcctccgatcattt 181  Q
    ||||||| | ||||||||||||||||||||||||||| ||| |||||||| || ||||| |||||||| |||||||| |||||  |||| ||||||||||    
T  33305439 ttattacttagctcaagatccttataaatccaatctgaaaagtacatttccgatgtacatgaccctcccgtgtcataattctttcttcccccgatcattt 33305340  T
Q  182 caagaatcaacatgccataactatatacatcagatttgtaagaaacaccaccaaatg 238  Q
    | || || ||||| |||||||| |||||||| || || | |||||| ||||||||||    
T  33305339 ctagtattaacataccataactgtatacatcggacttatgagaaactccaccaaatg 33305283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 82 - 236
Target Start/End: Complemental strand, 31573124 - 31572976
Alignment:
Q  82 ttattaccttgctcaagatccttataaatccaatctggaaaatacatttcagaagtacacgaccctccagtgtcatagttcttctttcctccgatcattt 181  Q
    ||||||| | |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||  |||| || |||||||    
T  31573124 ttattacttagctcaagatcattataaatccaatctggaaagtacatttcagaagtacacgaccctcctgtgtcatagttctttcttccaccaatcattt 31573025  T
Q  182 caagaatcaacatgccataactatatacatcagatttgtaagaaacaccaccaaa 236  Q
    | | ||| |||||      || |||||||||||| |||| |||||| ||||||||    
T  31573024 ctaaaattaacat------accatatacatcagacttgtgagaaactccaccaaa 31572976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 83 - 241
Target Start/End: Complemental strand, 31439306 - 31439148
Alignment:
Q  83 tattaccttgctcaagatccttataaatccaatctggaaaatacatttcagaagtacacgaccctccagtgtcatagttcttctttcctccgatcatttc 182  Q
    ||||||||||||||||||||||||| |||||||| ||||| ||||||||||   ||   ||||||| ||| |||    ||||  || ||||| | |||||    
T  31439306 tattaccttgctcaagatccttatatatccaatccggaaagtacatttcagtcatatcagaccctctagtatcacgactctttctttctccggttatttc 31439207  T
Q  183 aagaatcaacatgccataactatatacatcagatttgtaagaaacaccaccaaatgctc 241  Q
     ||| |||||||||||||||| ||||||||||| ||  ||||||| |||||||||||||    
T  31439206 gagagtcaacatgccataactgtatacatcagacttagaagaaactccaccaaatgctc 31439148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 21898469 - 21898417
Alignment:
Q  175 atcatttcaagaatcaacatgccataactatatacatcagatttgtaagaaac 227  Q
    ||||| |||| ||||||||| ||||||||||||| ||||||||| | ||||||    
T  21898469 atcatgtcaataatcaacattccataactatatatatcagatttttcagaaac 21898417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 10 - 245
Target Start/End: Complemental strand, 52174670 - 52174438
Alignment:
Q  10 agactcaccataataatctttctaaccatatcattttcttcctctgacgatgtcatacagttaaaaaggttattattaccttgctcaagatccttataaa 109  Q
    |||||||||| | |||||||| |||||||||||||||||||||||||   ||||| ||| ||  ||||   | |||| ||||||||||||||||||||||    
T  52174670 agactcaccaaagtaatctttataaccatatcattttcttcctctgagattgtcaaacaatttgaaag---agtatttccttgctcaagatccttataaa 52174574  T
Q  110 tccaatctggaaaatacatttcagaagtacacgaccctccagtgtcatagttcttctttcctccgatcatttcaagaatcaacatgccataactatatac 209  Q
    |||| |||||||| |||||||| |||||||| |||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||| ||||     
T  52174573 tccagtctggaaagtacatttctgaagtacatgaccctccagtgtcatagttctttcttcctccaatcatttcaagaatcaacatgccataactgtatat 52174474  T
Q  210 atcagatttgtaagaaacaccaccaaatgctctact 245  Q
    ||||||||||||||||||||||||||||||||||||    
T  52174473 atcagatttgtaagaaacaccaccaaatgctctact 52174438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 49728781 - 49728741
Alignment:
Q  196 ccataactatatacatcagatttgtaagaaacaccaccaaa 236  Q
    ||||||||||||||||||||||||| ||| || ||||||||    
T  49728781 ccataactatatacatcagatttgtgagagacgccaccaaa 49728741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 84 - 241
Target Start/End: Complemental strand, 15063652 - 15063495
Alignment:
Q  84 attaccttgctcaagatccttataaatccaatctggaaaatacatttcagaagtacacgaccctccagtgtcatagttcttctttcctccgatcatttca 183  Q
    |||||||||||||||||||||| | |||||||| ||||| ||   ||| |  |||   ||||| ||||||||||| ||||| ||||||||| ||||||||    
T  15063652 attaccttgctcaagatccttaaatatccaatccggaaagtatgcttcggttgtatgagacccgccagtgtcataattcttttttcctccggtcatttca 15063553  T
Q  184 agaatcaacatgccataactatatacatcagatttgtaagaaacaccaccaaatgctc 241  Q
    |||||||||||||||||||| ||||||||||| ||  |||||||  ||||||| ||||    
T  15063552 agaatcaacatgccataactgtatacatcagacttagaagaaactgcaccaaaagctc 15063495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 84 - 241
Target Start/End: Original strand, 1882 - 2039
Alignment:
Q  84 attaccttgctcaagatccttataaatccaatctggaaaatacatttcagaagtacacgaccctccagtgtcatagttcttctttcctccgatcatttca 183  Q
    |||||||||||||||||||||| | |||||||| | ||| ||  |||| |  | |   ||||| ||||||||||| ||||| ||||||||| ||||||||    
T  1882 attaccttgctcaagatccttaaatatccaatccgaaaagtatgtttcggctgcaagagacccgccagtgtcataattcttttttcctccggtcatttca 1981  T
Q  184 agaatcaacatgccataactatatacatcagatttgtaagaaacaccaccaaatgctc 241  Q
    |||||||||||||||||||| ||||||||||| ||  |||||||  ||||||| ||||    
T  1982 agaatcaacatgccataactgtatacatcagacttagaagaaactgcaccaaaagctc 2039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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