View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14713_low_73 (Length: 238)
Name: NF14713_low_73
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14713_low_73 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 214
Target Start/End: Original strand, 43576885 - 43577089
Alignment:
| Q |
10 |
gaagaatatatgaaatgaagattctacatgtttaagacacaaactgcacattgatggaatattgcagcctctaatcattaagttctcatcagtagggacc |
109 |
Q |
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| T |
43576885 |
gaagaaaatatgaaatgaagattctacatgtttaagacacaaactgcacattgatggaatgttgcagcctctaatcattaagttctcatcagtagggacc |
43576984 |
T |
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| Q |
110 |
tttccatgcatcaatctccagacaaacattgactttgatgggggaacatcaacattccaaatcagctttgcccaagacaactcttgtaattgctgatgtt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43576985 |
tttccatgcatcaatctccagacaaacattgactttaatgggggaacatcaacattccaaatcagctttgcccaagacaactcttgaaattgctgatgtt |
43577084 |
T |
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| Q |
210 |
tgaaa |
214 |
Q |
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||||| |
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| T |
43577085 |
tgaaa |
43577089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 10 - 214
Target Start/End: Original strand, 32247827 - 32248031
Alignment:
| Q |
10 |
gaagaatatatgaaatgaagattctacatgtttaagacacaaactgcacattgatggaatattgcagcctctaatcattaagttctcatcagtagggacc |
109 |
Q |
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|||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||| ||||||||| |||||||||| |
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| T |
32247827 |
gaagaaaatatgaaatgaagattctacatgtttaaaacacaaattgcacattgatggaatgttgcagcctctaatcatttagttctcattagtagggacc |
32247926 |
T |
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| Q |
110 |
tttccatgcatcaatctccagacaaacattgactttgatgggggaacatcaacattccaaatcagctttgcccaagacaactcttgtaattgctgatgtt |
209 |
Q |
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| T |
32247927 |
tttccatgcatcaatctccagacaaacattgactttgatgggggaacatcaacattccaggtcagctttgcccaaggcaactcttcaaattgctgatgtt |
32248026 |
T |
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| Q |
210 |
tgaaa |
214 |
Q |
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||||| |
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| T |
32248027 |
tgaaa |
32248031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 15800382 - 15800465
Alignment:
| Q |
52 |
actgcacattgatggaatattgcagcctctaatcattaagttctcatcagtagggacctttccatgcatcaatctccagacaaa |
135 |
Q |
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| T |
15800382 |
actgcacattgaggggatgttgcagcctctaagcatcaagttttcatctgtagggactttgttatgcatgaatctccagacaaa |
15800465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 7713867 - 7713798
Alignment:
| Q |
86 |
attaagttctcatcagtagggacctttccatgcatcaatctccagacaaacattgactttgatgggggaa |
155 |
Q |
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| T |
7713867 |
attaaattctcatgagtaggaaccttgtcatgcatcaatctccacagaaacatggattttgatgggggaa |
7713798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 135
Target Start/End: Complemental strand, 29431845 - 29431764
Alignment:
| Q |
54 |
tgcacattgatggaatattgcagcctctaatcattaagttctcatcagtagggacctttccatgcatcaatctccagacaaa |
135 |
Q |
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|||||||||| || || ||||||||||||| ||| ||||| | ||| |||||||| || |||||| |||||||||||||| |
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| T |
29431845 |
tgcacattgaggggatgttgcagcctctaagcatcaagtttttatctgtagggactttgttatgcatgaatctccagacaaa |
29431764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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