View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14713_low_8 (Length: 602)
Name: NF14713_low_8
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14713_low_8 |
 | |
|
| [»] scaffold0552 (1 HSPs) |
| | |
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Alignment Details
Target: scaffold0552 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: scaffold0552
Description:
Target: scaffold0552; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 1 - 588
Target Start/End: Complemental strand, 7105 - 6518
Alignment:
| Q |
1 |
tagaacctggtaacagagtgaaggctatggtcatttttggagtggctttccttgttgagaagactaccgtatctctcttatttgtcgttgcttcggacaa |
100 |
Q |
| |
|
|||||| |||||||| ||||||| |||||| ||||||| | || ||||| ||||||||| ||||| ||||||||||||| |||||||||||| | ||| |
|
|
| T |
7105 |
tagaacttggtaacaaagtgaagtttatggttgtttttggggagggtttccatgttgagaatactacagtatctctcttatatgtcgttgcttctggcaa |
7006 |
T |
|
| Q |
101 |
tgacgataatcatgttggtgtttctggtggtgataatgaagtcataaatcagtttagggaggtaatggtgaaccatttgcagatcacttggcccacagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7005 |
tgacgataatcatgttggtgtttctggtggtgataatgaagtcataaatcagtttagggaggtaatggtgaaccatttgcagatcacttggcccacagat |
6906 |
T |
|
| Q |
201 |
gggtgttatactgatggcgtgggattggtagagctagtaccgcatgaccttgaccagcctgcggaggaagtagctgaggaggtttgtgcagctgaagttg |
300 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6905 |
gggtgttataccgatggcgtgggattggtagagctagtaccgcatgaccttgaccagcctgcggaggaagtagctgaggaggtttgtgcagctgaagttg |
6806 |
T |
|
| Q |
301 |
aggatggtcagaagcaacaggttcctctacccgagggtcagcctgagctgcgagcagcagaaacacctgagaccattgggctggttctaggaactcagat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6805 |
aggatggtcagaagcaacaggttcctctacccgagggtcagcctgagctgcgagcagcagaaacacctgagaccattgggctggttctaggaactcagat |
6706 |
T |
|
| Q |
401 |
tttggatgccctcaaagagttcagggctgatttcgttcgactagagcagactgttactgctaggttaaatgcggtagaggtcaaattagaggagcttgag |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
6705 |
tttggatgccctcaaagagttcagggctgatttcgttcgactagagcagactgttactgctaggttaaatgcagtagaggtcaaattagagaagcttgag |
6606 |
T |
|
| Q |
501 |
gatgtaattgctcagataccgcatgcatcgagtttcaagtccacttctatgcttatgtttctttcaatgttgctcttccttttgttat |
588 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6605 |
gatgtaattgctcagataccgcatgcatcgagtttcaagtccacttctatgcttatgtttctttcaatgttgctcttccttttgttat |
6518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 516; Significance: 0; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 1 - 588
Target Start/End: Original strand, 6816728 - 6817315
Alignment:
| Q |
1 |
tagaacctggtaacagagtgaaggctatggtcatttttggagtggctttccttgttgagaagactaccgtatctctcttatttgtcgttgcttcggacaa |
100 |
Q |
| |
|
|||||| |||||||| ||||||| |||||| ||||||| | || ||||| ||||||||| ||||| ||||||||||||| |||||||||||| | ||| |
|
|
| T |
6816728 |
tagaacttggtaacaaagtgaagtttatggttgtttttggggagggtttccatgttgagaatactacagtatctctcttatatgtcgttgcttctggcaa |
6816827 |
T |
|
| Q |
101 |
tgacgataatcatgttggtgtttctggtggtgataatgaagtcataaatcagtttagggaggtaatggtgaaccatttgcagatcacttggcccacagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6816828 |
tgacgataatcatgttggtgtttctggtggtgataatgaagtcataaatcagtttagggaggtaatggtgaaccatttgcagatcacttggcccacagat |
6816927 |
T |
|
| Q |
201 |
gggtgttatactgatggcgtgggattggtagagctagtaccgcatgaccttgaccagcctgcggaggaagtagctgaggaggtttgtgcagctgaagttg |
300 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6816928 |
gggtgttataccgatggcgtgggattggtagagctagtaccgcatgaccttgaccagcctgcggaggaagtagctgaggaggtttgtgcagctgaagttg |
6817027 |
T |
|
| Q |
301 |
aggatggtcagaagcaacaggttcctctacccgagggtcagcctgagctgcgagcagcagaaacacctgagaccattgggctggttctaggaactcagat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6817028 |
aggatggtcagaagcaacaggttcctctacccgagggtcagcctgagctgcgagcagcagaaacacctgagaccattgggctggttctaggaactcagat |
6817127 |
T |
|
| Q |
401 |
tttggatgccctcaaagagttcagggctgatttcgttcgactagagcagactgttactgctaggttaaatgcggtagaggtcaaattagaggagcttgag |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
6817128 |
tttggatgccctcaaagagttcagggctgatttcgttcgactagagcagactgttactgctaggttaaatgcagtagaggtcaaattagagaagcttgag |
6817227 |
T |
|
| Q |
501 |
gatgtaattgctcagataccgcatgcatcgagtttcaagtccacttctatgcttatgtttctttcaatgttgctcttccttttgttat |
588 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6817228 |
gatgtaattgctcagataccgcatgcatcgagtttcaagtccacttctatgcttatgtttctttcaatgttgctcttccttttgttat |
6817315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 246 - 586
Target Start/End: Original strand, 6798161 - 6798486
Alignment:
| Q |
246 |
gaccttgaccagcctgcggaggaagtagctgaggaggtttgtgcagctgaagttgaggatggtcagaagcaacaggttcctctacccgagggtcagcctg |
345 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||| || |||| |||||||| |||| || |||| ||| ||||| ||||||| ||| ||||||| | |
|
|
| T |
6798161 |
gaccttgaccagcctgaggaggaagtagaagaggaaattcgtgctgctgaagtagagggtgatcaggagctggaggtttctctacctgagagtcagcccg |
6798260 |
T |
|
| Q |
346 |
agctgcgagcagcagaaacacctgagaccattgggctggttctaggaactcagattttggatgccctcaaagagttcagggctgatttcgttcgactaga |
445 |
Q |
| |
|
||||| |||||| | || |||||||||||| | || |||||| |||||||||||||||||||||||||| |||||| ||||||||| |||||||| |
|
|
| T |
6798261 |
agctgaaagcagctgcaag---tgagaccattggaccggccctaggagctcagattttggatgccctcaaagagctcagggatgatttcgtccgactaga |
6798357 |
T |
|
| Q |
446 |
gcagactgttactgctaggttaaatgcggtagaggtcaaattagaggagcttgaggatgtaattgctcagataccgcatgcatcgagtttcaagtccact |
545 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||| ||||||| ||||| || |||| || | |||||||| ||||||| | |
|
|
| T |
6798358 |
gcagactgttac------------tgcagtagaggtcaaattagaggagctcgaggatgccattgcccaaatactgcgtcgatcgagttctaagtccatt |
6798445 |
T |
|
| Q |
546 |
tctatgcttatgtttctttcaatgttgctcttccttttgtt |
586 |
Q |
| |
|
|| || |||| ||||||||||| |||||||||||||||||| |
|
|
| T |
6798446 |
tcaatccttaggtttctttcaacgttgctcttccttttgtt |
6798486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 99 - 545
Target Start/End: Complemental strand, 6586991 - 6586545
Alignment:
| Q |
99 |
aatgacgataatcatgttggtgtttctggtggtgataatgaagtcataaatcagtttagggaggtaatggtgaaccatttgcagatcacttggcccacag |
198 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||| | |||| || | ||||||||||||||||| | | ||| ||| |
|
|
| T |
6586991 |
aatgacgataataatgttggtgtttctagtggtgataatgaagtcattaatcagtttggagaggaaacgccgaaccatttgcagatcattagtcccgcag |
6586892 |
T |
|
| Q |
199 |
atgggtgttatactgatggcgtgggattggtagagctagtaccgcatgaccttgaccagcctgcggaggaagtagctgaggaggtttgtgcagctgaagt |
298 |
Q |
| |
|
||||||| ||| | |||| |||||| |||| ||||||||| |||||||| |||||| |||||||| || |||||||||| || ||||||||||| |
|
|
| T |
6586891 |
atgggtggtatgccgatgttgtgggaccggtactgctagtaccatatgaccttcaccagcttgcggaggcagaagctgaggagcttcatgcagctgaaga |
6586792 |
T |
|
| Q |
299 |
tgaggatggtcagaagcaacaggttcctctacccgagggtcagcctgagctgcgagcagcagaaacacctgagaccattgggctggttctaggaactcag |
398 |
Q |
| |
|
| ||| |||| |||||||||||| || || || || ||||||| | || ||| || | | | | |||||| | | ||||||| ||||| |
|
|
| T |
6586791 |
aaaacatgatcaggagcaacaggttcttccacttaagtgtgagcctgaacagcatgcaatagtagcgtcagcgaccatagaacctactctaggagctcag |
6586692 |
T |
|
| Q |
399 |
attttggatgccctcaaagagttcagggctgatttcgttcgactagagcagactgttactgctaggttaaatgcggtagaggtcaaattagaggagcttg |
498 |
Q |
| |
|
||||||||||| ||| |||| |||||||||||||| | ||| ||||| |||||||||||||||||| ||||| ||||| || | ||| ||| ||||| |
|
|
| T |
6586691 |
attttggatgctatcagagagctcagggctgatttcatcagacaagagctgactgttactgctaggttgaatgcagtagatgtgagattggagaggcttg |
6586592 |
T |
|
| Q |
499 |
aggatgtaattgctcagataccgcatgcatcgagtttcaagtccact |
545 |
Q |
| |
|
|||||| ||||| || |||| ||||| |||||||| |||||||| |
|
|
| T |
6586591 |
aggatggcattgcccacatactgcatgggtcgagttttgagtccact |
6586545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 392 - 522
Target Start/End: Original strand, 6730074 - 6730204
Alignment:
| Q |
392 |
aactcagattttggatgccctcaaagagttcagggctgatttcgttcgactagagcagactgttactgctaggttaaatgcggtagaggtcaaattagag |
491 |
Q |
| |
|
|||||||||||||||||| |||| |||| ||| | |||||| || ||||||||||||||||||||| ||||||| ||||| |||||||||| ||||||| |
|
|
| T |
6730074 |
aactcagattttggatgctctcagagagctcaaagttgattttgtccgactagagcagactgttacttctaggttgaatgcagtagaggtcagattagag |
6730173 |
T |
|
| Q |
492 |
gagcttgaggatgtaattgctcagataccgc |
522 |
Q |
| |
|
| ||||||||||| ||| | || ||||||| |
|
|
| T |
6730174 |
gtacttgaggatgtcattacccaaataccgc |
6730204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 386 - 522
Target Start/End: Original strand, 6755039 - 6755175
Alignment:
| Q |
386 |
tctaggaactcagattttggatgccctcaaagagttcagggctgatttcgttcgactagagcagactgttactgctaggttaaatgcggtagaggtcaaa |
485 |
Q |
| |
|
||||||| |||| ||| |||||||| ||| || | |||||||||||||||| ||| |||||||||||||||| |||||| ||||| |||||||| | | |
|
|
| T |
6755039 |
tctaggagctcaaattctggatgccatcagagcgctcagggctgatttcgtcagacaagagcagactgttactagtaggttgaatgcagtagaggtgaga |
6755138 |
T |
|
| Q |
486 |
ttagaggagcttgaggatgtaattgctcagataccgc |
522 |
Q |
| |
|
|| |||||||||| ||||| || || |||||||||| |
|
|
| T |
6755139 |
ttggaggagcttgctgatgtcatagcccagataccgc |
6755175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 394 - 498
Target Start/End: Original strand, 6839235 - 6839339
Alignment:
| Q |
394 |
ctcagattttggatgccctcaaagagttcagggctgatttcgttcgactagagcagactgttactgctaggttaaatgcggtagaggtcaaattagagga |
493 |
Q |
| |
|
|||||||||||||||| ||| |||| ||||||||||||| || ||| |||||||||||||| |||||||| ||||| |||||||| | ||||||||| |
|
|
| T |
6839235 |
ctcagattttggatgcaatcagagagctcagggctgattttgtcagacacgagcagactgttacagctaggttcaatgcagtagaggtgagattagagga |
6839334 |
T |
|
| Q |
494 |
gcttg |
498 |
Q |
| |
|
||||| |
|
|
| T |
6839335 |
gcttg |
6839339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 6761868 - 6761943
Alignment:
| Q |
1 |
tagaacctggtaacagagtgaaggctatggtcatttttggagtggctttccttgttgagaagactaccgtatctct |
76 |
Q |
| |
|
||||||||||||||| ||||||| |||||| ||||||| | || |||| |||||||||||||||| |||||||| |
|
|
| T |
6761868 |
tagaacctggtaacaaagtgaagtttatggttgtttttggggagggtttcattgttgagaagactacagtatctct |
6761943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 6729777 - 6729820
Alignment:
| Q |
98 |
caatgacgataatcatgttggtgtttctggtggtgataatgaag |
141 |
Q |
| |
|
||||||||||||| ||||| |||||||||| ||||||||||||| |
|
|
| T |
6729777 |
caatgacgataataatgttagtgtttctggaggtgataatgaag |
6729820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 6754765 - 6754803
Alignment:
| Q |
112 |
atgttggtgtttctggtggtgataatgaagtcataaatc |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
6754765 |
atgttggtgtttctggtggtgataatgaagccatcaatc |
6754803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 6754897 - 6754950
Alignment:
| Q |
244 |
atgaccttgaccagcctgcggaggaagtagctgaggaggtttgtgcagctgaag |
297 |
Q |
| |
|
|||||||||| ||||||||||||| |||| |||||||| || ||||||||||| |
|
|
| T |
6754897 |
atgaccttgagcagcctgcggaggcagtaactgaggagattcatgcagctgaag |
6754950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 6797865 - 6797938
Alignment:
| Q |
1 |
tagaacctggtaacagagtgaaggctatggtcatttttggagtggctttccttgttgagaagactaccgtatct |
74 |
Q |
| |
|
||||||||||||||| |||| ||| |||||| ||||||| | || ||| ||||||||||||||||| ||||| |
|
|
| T |
6797865 |
tagaacctggtaacaaagtggaggttatggttgtttttggggagggattcattgttgagaagactaccctatct |
6797938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 6839073 - 6839122
Alignment:
| Q |
232 |
agctagtaccgcatgaccttgaccagcctgcggaggaagtagctgaggag |
281 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
6839073 |
agctagtaccaaatgaccttgaccagcctgtagaggcagtagctgaggag |
6839122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 6587143 - 6587063
Alignment:
| Q |
1 |
tagaacctggtaacagagtgaaggctatggtcatttttggagtggctttccttgttgagaagactaccgtatctctcttat |
81 |
Q |
| |
|
||||||||||||||| |||| ||| ||||| | ||||| | || |||| |||||||||||||||| |||||||||||| |
|
|
| T |
6587143 |
tagaacctggtaacaaagtggaggtaatggttgtatttggggagggtttcattgttgagaagactacaatatctctcttat |
6587063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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