View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14713_low_81 (Length: 220)
Name: NF14713_low_81
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14713_low_81 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 36883398 - 36883217
Alignment:
| Q |
17 |
cagagaagcaaagaccgataagtgaagaaatggcaaaggcgtcgaatgcaggcttgccttctaatactggactaccttcatcggttgtgccaccaggtac |
116 |
Q |
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| T |
36883398 |
cagagaagcaaagaccgataagtgaagaaatggcaaaggcgtcaaatgcaggcttgccttctaatactggactgccttcatcggttgtgccgccaggtac |
36883299 |
T |
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| Q |
117 |
ttggcttgctgtggcgaaggaaacaccggctacaaggccagatacgacggagcaggattctgacgtgtcttttagccaactg |
198 |
Q |
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| T |
36883298 |
ttggcttgctgtggcaaaggaaacaccggctacaaggccagatacgacggagcaggattctgacgtgtcttttagccaactg |
36883217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 36893399 - 36893224
Alignment:
| Q |
19 |
gagaagcaaagaccgataagtgaagaaatggcaaaggcgtcgaatgcaggcttgccttctaatactggactaccttcatcggttgtgccaccaggtactt |
118 |
Q |
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| T |
36893399 |
gagaagcagagaccgataagtgaagaaatggcaaagacatcgaatgcaggcttgccttctaataccggtctaccttgatcagttgtgccgccaggtacag |
36893300 |
T |
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| Q |
119 |
ggcttgctgtggcgaaggaaacaccggctacaaggccagatacgacggagcaggattctgacgtgtcttttagcca |
194 |
Q |
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| T |
36893299 |
cgcttgctgtggcaaaggaaacaccagctacaagggcagatacaacagagcaggattccgatgtgtcttttagcca |
36893224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 194
Target Start/End: Complemental strand, 36903160 - 36903029
Alignment:
| Q |
60 |
gaatgcaggcttgccttctaatactggactaccttcatcggttgtgccaccaggtacttggcttgctgtggcgaaggaaacaccggctacaaggccagat |
159 |
Q |
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| T |
36903160 |
gaatgcaggattgccttctaatactggtctaccctca---gttgttccgccaggtactgcacttgttgtggtgaaggaagcaccagcgacaagcgcggct |
36903064 |
T |
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| Q |
160 |
acgacggagcaggattctgacgtgtcttttagcca |
194 |
Q |
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| T |
36903063 |
acaaccgagcaggaatctgctgtgttttttagcca |
36903029 |
T |
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