View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14713_low_84 (Length: 210)

Name: NF14713_low_84

Description: NF14713

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF14713_low_84

[»] chr8 (1 HSPs)

[»] chr2 (1 HSPs)

Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 135; E-Value: 2e-70

Query Start/End: Original strand, 17 - 198

Target Start/End: Original strand, 37201644 - 37201818

Alignment:

Q	17	agatatatgcatatagcatcatggttatgaaccaaaaagatatagatgacacctaataaatcatgatttattttgagttaggattataaattatttccac	116	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	37201644	agatatatgcatatagcatcatggttatgaaccaaaaagatatagatgacacctaataaatcatgatttattttgagttagg-------attatttccac	37201736	T

Q	117	ttcttattgagaactaagcaatatactctattaaataaacgacagannnnnnnatagcatctctactagcaagagaataatc	198	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37201737	ttcttattgagaactaagcaatatactctattaaataaacgacagatttttttatagcatctctactagcaagagaataatc	37201818	T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 43; E-Value: 0.000000000000001

Query Start/End: Original strand, 37 - 156

Target Start/End: Complemental strand, 415239 - 415120

Alignment:

Q	37	atggttatgaaccaaaaagatatagatgacacc-------taataaatcatgatttattttgagttaggattataaattatttccacttcttattgagaa	129	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|
T	415239	atggttatgaaccaaaaagatatagataacaccctctaactaataaatcatgatttattttgagtta-------agattatttccacatcttattcagaa	415147	T

Q	130	ctaagcaatatactctattaaataaac	156	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|
T	415146	ttaagcaatatgttctattcaataaac	415120	T

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