View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14713_low_87 (Length: 206)
Name: NF14713_low_87
Description: NF14713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14713_low_87 |
 | |
|
| [»] scaffold0552 (1 HSPs) |
| | |
|
| [»] scaffold0373 (1 HSPs) |
| | |
|
| [»] scaffold0286 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0552 (Bit Score: 127; Significance: 9e-66; HSPs: 1)
Name: scaffold0552
Description:
Target: scaffold0552; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 7154 - 6980
Alignment:
| Q |
18 |
acactaacctcgtttgaggatgaggattggcagagcataacatcaaatctagaacctggtaacagagtgaaggttatggttatttttggagagggtttcg |
117 |
Q |
| |
|
||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||| ||||||| ||||||||| |
|
|
| T |
7154 |
acactaatctcatttgatgatgaggattggcagagcataacatcaaatctagaacttggtaacaaagtgaagtttatggttgtttttggggagggtttcc |
7055 |
T |
|
| Q |
118 |
ttgttgagaagactacagtatctctcttatatgtcgttgcttctggcaatgacgataatcatgttggtgtctctg |
192 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7054 |
atgttgagaatactacagtatctctcttatatgtcgttgcttctggcaatgacgataatcatgttggtgtttctg |
6980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 9e-66; HSPs: 16)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 6816679 - 6816853
Alignment:
| Q |
18 |
acactaacctcgtttgaggatgaggattggcagagcataacatcaaatctagaacctggtaacagagtgaaggttatggttatttttggagagggtttcg |
117 |
Q |
| |
|
||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||| ||||||| ||||||||| |
|
|
| T |
6816679 |
acactaatctcatttgatgatgaggattggcagagcataacatcaaatctagaacttggtaacaaagtgaagtttatggttgtttttggggagggtttcc |
6816778 |
T |
|
| Q |
118 |
ttgttgagaagactacagtatctctcttatatgtcgttgcttctggcaatgacgataatcatgttggtgtctctg |
192 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6816779 |
atgttgagaatactacagtatctctcttatatgtcgttgcttctggcaatgacgataatcatgttggtgtttctg |
6816853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 21 - 150
Target Start/End: Complemental strand, 6587189 - 6587060
Alignment:
| Q |
21 |
ctaacctcgtttgaggatgaggattggcagagcataacatcaaatctagaacctggtaacagagtgaaggttatggttatttttggagagggtttcgttg |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||| |||||| | ||||| ||||||||| ||| |
|
|
| T |
6587189 |
ctaacctcgtttgaggatgaggattggcagagcataacatctaatctagaacctggtaacaaagtggaggtaatggttgtatttggggagggtttcattg |
6587090 |
T |
|
| Q |
121 |
ttgagaagactacagtatctctcttatatg |
150 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |
|
|
| T |
6587089 |
ttgagaagactacaatatctctcttatatg |
6587060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 30 - 142
Target Start/End: Original strand, 6761831 - 6761943
Alignment:
| Q |
30 |
tttgaggatgaggattggcagagcataacatcaaatctagaacctggtaacagagtgaaggttatggttatttttggagagggtttcgttgttgagaaga |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||| ||||||||| |||||||||||| |
|
|
| T |
6761831 |
tttgaggatgaggattggcagagcataacatcaaatctagaacctggtaacaaagtgaagtttatggttgtttttggggagggtttcattgttgagaaga |
6761930 |
T |
|
| Q |
130 |
ctacagtatctct |
142 |
Q |
| |
|
||||||||||||| |
|
|
| T |
6761931 |
ctacagtatctct |
6761943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 6729577 - 6729709
Alignment:
| Q |
18 |
acactaacctcgtttgaggatgaggattggcagagcataacatcaaatctagaacctggtaacagagtgaaggttatggttatttttggagagggtttcg |
117 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||| |||||||| |
|
|
| T |
6729577 |
acactaacctcctttgaggacgaggattggcagagcataacatcaaatctagaacctggtaacaaagtggaggttatggttgtttttgcgaagggtttct |
6729676 |
T |
|
| Q |
118 |
ttgttgagaagactacagtatctctcttatatg |
150 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||| |
|
|
| T |
6729677 |
ttgttaagaagactacattatctctcttatatg |
6729709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 5596848 - 5596716
Alignment:
| Q |
18 |
acactaacctcgtttgaggatgaggattggcagagcataacatcaaatctagaacctggtaacagagtgaaggttatggttatttttggagagggtttcg |
117 |
Q |
| |
|
||||||||||| |||||||||| |||||||||| |||||||||| ||||||||||||| ||||| |||||| ||||||||| ||||||| ||||||||| |
|
|
| T |
5596848 |
acactaacctcatttgaggatgtggattggcagcgcataacatcgaatctagaacctgctaacaaagtgaatgttatggttgtttttggggagggtttca |
5596749 |
T |
|
| Q |
118 |
ttgttgagaagactacagtatctctcttatatg |
150 |
Q |
| |
|
|||||||||||||||| |||||||||| |||| |
|
|
| T |
5596748 |
ctgttgagaagactacaatatctctcttgtatg |
5596716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 6740567 - 6740699
Alignment:
| Q |
18 |
acactaacctcgtttgaggatgaggattggcagagcataacatcaaatctagaacctggtaacagagtgaaggttatggttatttttggagagggtttcg |
117 |
Q |
| |
|
||||||||||||||||| |||| ||||| |||||| |||||||||||||||||||||||||||| |||||| |||||||| ||||||| ||||| ||| |
|
|
| T |
6740567 |
acactaacctcgtttgaagatgtggatttgcagagtataacatcaaatctagaacctggtaacaaggtgaagattatggttgtttttggggagggattca |
6740666 |
T |
|
| Q |
118 |
ttgttgagaagactacagtatctctcttatatg |
150 |
Q |
| |
|
||||||||||||||||| ||||||||| |||| |
|
|
| T |
6740667 |
ttgttgagaagactacaacatctctcttgtatg |
6740699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 6531272 - 6531139
Alignment:
| Q |
18 |
acactaacctcgtttgaggatgaggattggcagagcataacatcaaatctagaacctggtaacagagtgaaggttatggttatttttggagagggtttcg |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| ||||| || || ||||||||||||| ||| |
|
|
| T |
6531272 |
acactaacctcctttgaggatgaggattggcagaacataaaatcaaatctagaacctggtaatgaagtggaggttgtgcttgtttttggagagggattca |
6531173 |
T |
|
| Q |
118 |
ttgttgagaagactacagtatctctcttatatgt |
151 |
Q |
| |
|
|||| |||||||| ||| ||| |||||||||||| |
|
|
| T |
6531172 |
ttgtggagaagacaacaatatatctcttatatgt |
6531139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 6797816 - 6797931
Alignment:
| Q |
18 |
acactaacctcgtttgaggatgaggattggcagagcataacatcaaatctagaacctggtaacagagtgaaggttatggttatttttggagagggtttcg |
117 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||| | ||||||||||||| ||||||||||||||| |||| ||||||||||| ||||||| ||||| ||| |
|
|
| T |
6797816 |
acactaacctcctttgatgatgaagattggcataccataacatcaaatgtagaacctggtaacaaagtggaggttatggttgtttttggggagggattca |
6797915 |
T |
|
| Q |
118 |
ttgttgagaagactac |
133 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
6797916 |
ttgttgagaagactac |
6797931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 34 - 150
Target Start/End: Complemental strand, 6544296 - 6544180
Alignment:
| Q |
34 |
aggatgaggattggcagagcataacatcaaatctagaacctggtaacagagtgaaggttatggttatttttggagagggtttcgttgttgagaagactac |
133 |
Q |
| |
|
||||||| |||||| ||| ||||||||||||||||||||||||||||| |||| |||||||| || ||||||| ||||| ||| |||| |||||||| || |
|
|
| T |
6544296 |
aggatgatgattggaagaacataacatcaaatctagaacctggtaacaaagtggaggttatgattgtttttggggagggattcattgtagagaagacaac |
6544197 |
T |
|
| Q |
134 |
agtatctctcttatatg |
150 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
6544196 |
aatatctctcttatatg |
6544180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 6676878 - 6677010
Alignment:
| Q |
18 |
acactaacctcgtttgaggatgaggattggcagagcataacatcaaatctagaacctggtaacagagtgaaggttatggttatttttggagagggtttcg |
117 |
Q |
| |
|
||||||||||| |||||| ||||||||||| |||||||||||||||||| ||||||||||||| ||| ||||||| ||| | ||||| || || ||| |
|
|
| T |
6676878 |
acactaacctcctttgagattgaggattggcggagcataacatcaaatcttgaacctggtaacaaggtggaggttattgttgtgtttggggatggattca |
6676977 |
T |
|
| Q |
118 |
ttgttgagaagactacagtatctctcttatatg |
150 |
Q |
| |
|
||||||||||||| ||| ||||||| ||||||| |
|
|
| T |
6676978 |
ttgttgagaagacaacattatctcttttatatg |
6677010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 30 - 150
Target Start/End: Original strand, 6759288 - 6759408
Alignment:
| Q |
30 |
tttgaggatgaggattggcagagcataacatcaaatctagaacctggtaacagagtgaaggttatggttatttttggagagggtttcgttgttgagaaga |
129 |
Q |
| |
|
|||| |||||| |||||| ||||| |||| ||||| |||||||||||||||| ||| ||||||||||| ||||| | |||||||| |||||||||||| |
|
|
| T |
6759288 |
tttggggatgatgattgggagagcgtaacgtcaaacctagaacctggtaacaaagtcgaggttatggttgtttttcggcagggtttcattgttgagaaga |
6759387 |
T |
|
| Q |
130 |
ctacagtatctctcttatatg |
150 |
Q |
| |
|
|| |||||||||||||||||| |
|
|
| T |
6759388 |
ctgcagtatctctcttatatg |
6759408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 6652366 - 6652469
Alignment:
| Q |
18 |
acactaacctcgtttgaggatgaggattggcagagcataacatcaaatctagaacctggtaacagagtgaaggttatggttatttttggagagggtttcg |
117 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||||||||||| ||| |||||| ||| ||||||||||| |||||| ||||| |||| |
|
|
| T |
6652366 |
acactaacctccttcgaggatgaggattggcagagcataacatcaaatctagagcctagtaacaaagtagaggttatggttgtttttgaggagggattcg |
6652465 |
T |
|
| Q |
118 |
ttgt |
121 |
Q |
| |
|
|||| |
|
|
| T |
6652466 |
ttgt |
6652469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 37 - 150
Target Start/End: Complemental strand, 6497388 - 6497275
Alignment:
| Q |
37 |
atgaggattggcagagcataacatcaaatctagaacctggtaacagagtgaaggttatggttatttttggagagggtttcgttgttgagaagactacagt |
136 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||||| |||| | |||||| || ||||||| ||||| ||| |||| |||||||| | | | |
|
|
| T |
6497388 |
atgaggattggaagagcataacatcaaatctagaatctggtaacaaagtggaagttatgattgtttttggggagggattcattgtagagaagacaaaatt |
6497289 |
T |
|
| Q |
137 |
atctctcttatatg |
150 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
6497288 |
atctctcttatatg |
6497275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 37 - 150
Target Start/End: Original strand, 6754570 - 6754683
Alignment:
| Q |
37 |
atgaggattggcagagcataacatcaaatctagaacctggtaacagagtgaaggttatggttatttttggagagggtttcgttgttgagaagactacagt |
136 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||| ||| |||||||||| ||||| | || |||||| ||||||| |||||||| | |
|
|
| T |
6754570 |
atgaggattggcagaccataacgtcaaatctagaacctggtaacaatgtgcaggttatggtaattttggaggaaggtttcattgttgacaagactacgat |
6754669 |
T |
|
| Q |
137 |
atctctcttatatg |
150 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
6754670 |
atctctcttatatg |
6754683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 6620394 - 6620269
Alignment:
| Q |
25 |
cctcgtttgaggatgaggattggcagagcataacatcaaatctagaacctggtaacagagtgaaggttatggttatttttggagagggtttcgttgttga |
124 |
Q |
| |
|
|||| |||||||||||||| ||| ||| | ||||||||| ||||||||||||||||| |||| ||||||||| | |||||| ||||| ||| ||| || |
|
|
| T |
6620394 |
cctcctttgaggatgaggactggaagaacttaacatcaagtctagaacctggtaacacagtggaggttatggctgtttttgcggagggattcaatgtaga |
6620295 |
T |
|
| Q |
125 |
gaagactacagtatctctcttatatg |
150 |
Q |
| |
|
|| || ||||||||||||||||||| |
|
|
| T |
6620294 |
aaaaacaacagtatctctcttatatg |
6620269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 142
Target Start/End: Original strand, 6838758 - 6838863
Alignment:
| Q |
37 |
atgaggattggcagagcataacatcaaatctagaacctggtaacagagtgaaggttatggttatttttggagagggtttcgttgttgagaagactacagt |
136 |
Q |
| |
|
|||||||||||| || | |||| |||| ||||||||||||||||| |||| ||||||||||| |||| || || |||||| ||| ||| ||||||||| | |
|
|
| T |
6838758 |
atgaggattggcggaccgtaacgtcaattctagaacctggtaacaaagtggaggttatggttgttttaggggaaggtttcattgctgacaagactacaat |
6838857 |
T |
|
| Q |
137 |
atctct |
142 |
Q |
| |
|
|||||| |
|
|
| T |
6838858 |
atctct |
6838863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0373 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: scaffold0373
Description:
Target: scaffold0373; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 56 - 150
Target Start/End: Complemental strand, 17207 - 17113
Alignment:
| Q |
56 |
aacatcaaatctagaacctggtaacagagtgaaggttatggttatttttggagagggtttcgttgttgagaagactacagtatctctcttatatg |
150 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||| ||||||| ||||| ||| ||||||||||||||||| ||||||||| |||| |
|
|
| T |
17207 |
aacatcaaatctagaacctggtaacaaggtgaagattatggttgtttttggggagggattcattgttgagaagactacaacatctctcttgtatg |
17113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 7976 - 8101
Alignment:
| Q |
25 |
cctcgtttgaggatgaggattggcagagcataacatcaaatctagaacctggtaacagagtgaaggttatggttatttttggagagggtttcgttgttga |
124 |
Q |
| |
|
|||| |||||||||||||| ||| ||| | ||||||||| ||||||||||||||||| |||| ||||||||| | |||||| ||||| ||| ||| || |
|
|
| T |
7976 |
cctcctttgaggatgaggactggaagaacttaacatcaagtctagaacctggtaacacagtggaggttatggctgtttttgcggagggattcaatgtaga |
8075 |
T |
|
| Q |
125 |
gaagactacagtatctctcttatatg |
150 |
Q |
| |
|
|| || ||||||||||||||||||| |
|
|
| T |
8076 |
aaaaacaacagtatctctcttatatg |
8101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University