View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14714_high_1 (Length: 502)
Name: NF14714_high_1
Description: NF14714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14714_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 19 - 493
Target Start/End: Original strand, 2222138 - 2222612
Alignment:
| Q |
19 |
cctgcgattcacacgacccaaacctcaaaacctcaatcaacggtggaacaattcctgaccggactatcttcactttgttaactttctcaagtgaaaggtt |
118 |
Q |
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| T |
2222138 |
cctgcgattcacacgatccaaacctcaaaacctcaatcaacggtggaacaattcctgaccggactatcttcactttgttaactttctcaagtgaaaggtt |
2222237 |
T |
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| Q |
119 |
gaccaatgaagcaagtgcattgactcttacaacctcgttcttagacaaaatcaaagaacgcagaaaacatagtaccctattggtgcaaagttgaactcta |
218 |
Q |
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| T |
2222238 |
gaccaatgaagcaagtgcattgactcttacaacctcgttcttagacaaaatcaaagaacgcagaaaacatagtaccctattgctgcaaagttgaactcta |
2222337 |
T |
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| Q |
219 |
ctttccaaattcgttcttgtgatttttctgagtgagattaaaccttcttctactataaccaattcatggtttctgagttttgttactatttcttcttctt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2222338 |
ctttccaaattcgttcttgtgatttttctgagtgagattaaaccttcttctactataaccaattcatggtttctgagttttgttactatttcttcttctt |
2222437 |
T |
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| Q |
319 |
ccggtgttgttgaaggttcaagttcagatgaagaaggtgaagagtaacagaaactttgaagctgtggtggtgttgttcttgttgatgatgatgaagtgac |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2222438 |
ccggtgttgttgaaggttcaagttcagatgaagaaggtgaagagtaacagaaactttgaagctgtggtggtgttgttcttgttgatgatgatgaagtgac |
2222537 |
T |
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| Q |
419 |
agtagctatagattcctctgagcttgagtacgaggtttttcgtggtgttaacattgatattggtcgtgtttcttc |
493 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2222538 |
agtagctatagattcctctgagcttgagtaggaggtttttcgtggtgttaacattgatattggtcgtgtttcttc |
2222612 |
T |
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