View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14714_low_4 (Length: 339)

Name: NF14714_low_4
Description: NF14714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14714_low_4
NF14714_low_4
[»] scaffold0386 (2 HSPs)
scaffold0386 (1-335)||(14952-15287)
scaffold0386 (256-325)||(3523-3592)
[»] chr1 (3 HSPs)
chr1 (1-147)||(52090344-52090488)
chr1 (263-331)||(14961980-14962049)
chr1 (41-90)||(45670782-45670831)
[»] chr4 (9 HSPs)
chr4 (256-335)||(5674428-5674502)
chr4 (181-253)||(5674318-5674390)
chr4 (256-331)||(5686964-5687039)
chr4 (256-335)||(5693081-5693159)
chr4 (256-335)||(5693849-5693927)
chr4 (194-248)||(5692981-5693035)
chr4 (194-248)||(5693749-5693803)
chr4 (49-90)||(29798858-29798899)
chr4 (180-248)||(5686850-5686918)
[»] chr3 (3 HSPs)
chr3 (256-302)||(18549691-18549737)
chr3 (46-80)||(53823955-53823989)
chr3 (46-90)||(35656249-35656292)
[»] chr5 (3 HSPs)
chr5 (49-147)||(38631478-38631571)
chr5 (41-81)||(1411641-1411681)
chr5 (292-324)||(13372164-13372196)
[»] chr2 (3 HSPs)
chr2 (46-90)||(39879773-39879817)
chr2 (51-90)||(4452491-4452530)
chr2 (41-90)||(12758906-12758955)
[»] chr6 (3 HSPs)
chr6 (51-90)||(35189979-35190018)
chr6 (102-144)||(27534209-27534251)
chr6 (102-144)||(27576516-27576558)
[»] chr8 (1 HSPs)
chr8 (54-90)||(13172537-13172573)


Alignment Details
Target: scaffold0386 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 15287 - 14952
Alignment:
Q  1 ttccttagtttgtacggaggcaacaaaaagttttgattgattttatagaaaataattataatgtttgttgttaaaactttgctattttatnnnnnnnnnn 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||              
T  15287 ttccttagtttgtacggaggcaacaaaaagttttgattggttttaaagaaaataattataatgtttgttgttaaaactttgctattttataaaaaaaaaa 15188  T
Q  101 -ggtatgaacaaataattagaagaactgctctaacaaaaataagacggnnnnnnnngttacattgtatttttattaaaaatataatgaaattttaagaac 199  Q
     |||||||||||||||||||||||||||||||||||||||||||||||        |||||||||| |||||||||||||||||||||||||| ||||||    
T  15187 aggtatgaacaaataattagaagaactgctctaacaaaaataagacggaaaaaaaagttacattgtgtttttattaaaaatataatgaaatttgaagaac 15088  T
Q  200 aattgtagggtttagatgcagattaccaaacattgacggatatgggatttgaaaccatttactttttgctatttaatttatgattgttaaagaaactatt 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15087 aattgtagggtttagatgcagattaccaaacattgacggatatgggatttgaaaccatttactttttgctatttaatttatgattgttaaagaaactatt 14988  T
Q  300 tgcgttgtgcaacccccaaattttaatacatctgtg 335  Q
    ||| ||||||||||||||||||||||||||||||||    
T  14987 tgccttgtgcaacccccaaattttaatacatctgtg 14952  T

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Target: scaffold0386; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 325
Target Start/End: Complemental strand, 3592 - 3523
Alignment:
Q  256 atttactttttgctatttaatttatgattgttaaagaaactatttgcgttgtgcaacccccaaattttaa 325  Q
    |||||| ||||||||| ||  |||||| ||||||| ||||||| ||| ||||||||||||  ||||||||    
T  3592 atttacattttgctatgtatgttatgaatgttaaataaactatatgcattgtgcaaccccgcaattttaa 3523  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 52090488 - 52090344
Alignment:
Q  1 ttccttagtttgtacggaggcaaca-aaaagttttgattgattttatagaaaataattataatgtttgttgttaaaactttgctattttatnnnnnnnnn 99  Q
    ||||||||||| |||||||| || | |||||||  |  || ||||||||||||||||||||| ||||||||||||||||||||||||||||             
T  52090488 ttccttagtttatacggaggtaaaacaaaagttcagggtgtttttatagaaaataattataacgtttgttgttaaaactttgctattttatacaaaaaa- 52090390  T
Q  100 nggtatgaacaaataattagaagaactgctctaacaaaaataagacgg 147  Q
      ||||| ||||||||||| |||||| |||||| ||||||||||||||    
T  52090389 --gtatgtacaaataattacaagaaccgctctatcaaaaataagacgg 52090344  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 331
Target Start/End: Original strand, 14961980 - 14962049
Alignment:
Q  263 ttttgctatttaatttatgattgttaaagaaactatttgcgttgtgcaa-cccccaaattttaatacatc 331  Q
    |||||||||||||||||||||| |||||  |||| |||||  ||| ||| ||||||||||||||||||||    
T  14961980 ttttgctatttaatttatgatttttaaaccaactctttgccatgttcaaccccccaaattttaatacatc 14962049  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 45670831 - 45670782
Alignment:
Q  41 ttttatagaaaataattataatgtttgttgttaaaactttgctattttat 90  Q
    |||| |||| |||||||||||||| |||||||| ||||||| ||||||||    
T  45670831 ttttttagagaataattataatgtgtgttgttagaactttgttattttat 45670782  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 256 - 335
Target Start/End: Original strand, 5674428 - 5674502
Alignment:
Q  256 atttactttttgctatttaatttatgattgttaaagaaactatttgcgttgtgcaacccccaaattttaatacatctgtg 335  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||     ||||| | ||||||||||||||||||    
T  5674428 atttactttttgctatttaatttatgatggttaaagaaactatttgcgt-----aaccctccaattttaatacatctgtg 5674502  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 253
Target Start/End: Original strand, 5674318 - 5674390
Alignment:
Q  181 ataatgaaattttaagaacaattgtagggtttagatgcagattaccaaacattgacggatatgggatttgaaa 253  Q
    |||||||||||  |||||||||| |||||||||| | ||  ||||||||||||||||||||||||||||||||    
T  5674318 ataatgaaattagaagaacaattatagggtttaggtacaatttaccaaacattgacggatatgggatttgaaa 5674390  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 331
Target Start/End: Original strand, 5686964 - 5687039
Alignment:
Q  256 atttactttttgctatttaatttatgattgttaaagaaactatttgcgttgtgcaacccccaaattttaatacatc 331  Q
    |||||| ||||||||||||  |||||||||||||| ||||||| ||| ||||||||||||  |||||||| |||||    
T  5686964 atttacattttgctatttatgttatgattgttaaacaaactatctgcattgtgcaaccccgcaattttaaaacatc 5687039  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 335
Target Start/End: Original strand, 5693081 - 5693159
Alignment:
Q  256 atttactttttgctatttaatttatgattgttaaagaaactatttgcgttgtgcaacccccaaattttaatacatctgtg 335  Q
    |||||| |||||||||||   |||||||||| ||| ||| ||||||| ||||||||||| | |||||||| |||||||||    
T  5693081 atttacattttgctatttgtgttatgattgtgaaacaaaatatttgcattgtgcaacccgc-aattttaaaacatctgtg 5693159  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 335
Target Start/End: Original strand, 5693849 - 5693927
Alignment:
Q  256 atttactttttgctatttaatttatgattgttaaagaaactatttgcgttgtgcaacccccaaattttaatacatctgtg 335  Q
    |||||| |||||||||||   |||||||||| ||| ||| ||||||| ||||||||||| | |||||||| |||||||||    
T  5693849 atttacattttgctatttgtgttatgattgtgaaacaaaatatttgcattgtgcaacccgc-aattttaaaacatctgtg 5693927  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 5692981 - 5693035
Alignment:
Q  194 aagaacaattgtagggtttagatgcagattaccaaacattgacggatatgggatt 248  Q
    |||||||||| | |||||||| ||||| |||||||||||||||||| || |||||    
T  5692981 aagaacaattattgggtttaggtgcagtttaccaaacattgacggaaataggatt 5693035  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 5693749 - 5693803
Alignment:
Q  194 aagaacaattgtagggtttagatgcagattaccaaacattgacggatatgggatt 248  Q
    |||||||||| | |||||||| ||||| |||||||||||||||||| || |||||    
T  5693749 aagaacaattattgggtttaggtgcagtttaccaaacattgacggaaataggatt 5693803  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 29798858 - 29798899
Alignment:
Q  49 aaaataattataatgtttgttgttaaaactttgctattttat 90  Q
    ||||||||||||||||||||||||| || ||||| |||||||    
T  29798858 aaaataattataatgtttgttgttagaagtttgcgattttat 29798899  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 5686850 - 5686918
Alignment:
Q  180 tataatgaaattttaagaacaattgtagggtttagatgcagattaccaaacattgacggatatgggatt 248  Q
    |||||||||| |  |||||||||| | || ||||| ||||| |||||||||||||||| |||| |||||    
T  5686850 tataatgaaactagaagaacaattattggatttaggtgcagtttaccaaacattgacgaatataggatt 5686918  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 18549691 - 18549737
Alignment:
Q  256 atttactttttgctatttaatttatgattgttaaagaaactatttgc 302  Q
    |||||| |||||||||||||||| ||||||||||| |||||||||||    
T  18549691 atttacattttgctatttaatttttgattgttaaataaactatttgc 18549737  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 53823955 - 53823989
Alignment:
Q  46 tagaaaataattataatgtttgttgttaaaacttt 80  Q
    |||| ||||||||||||||||||||||||||||||    
T  53823955 tagagaataattataatgtttgttgttaaaacttt 53823989  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 35656249 - 35656292
Alignment:
Q  46 tagaaaataattataatgtttgttgttaaaactttgctattttat 90  Q
    ||||||||| |||||||||||||||||| ||||||| ||||||||    
T  35656249 tagaaaata-ttataatgtttgttgttagaactttgttattttat 35656292  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 147
Target Start/End: Original strand, 38631478 - 38631571
Alignment:
Q  49 aaaataattataatgtttgttgttaaaactttgctattttatnnnnnnnnnnggtatgaacaaataattagaagaactgctctaacaaaaataagacgg 147  Q
    |||||||||||||||||| |||||| |||||| |||||||||           ||||||||||| | ||| ||||||| ||||||||||||||||||||    
T  38631478 aaaataattataatgtttattgttagaactttactattttatacaaaa-----gtatgaacaaaaatttacaagaactactctaacaaaaataagacgg 38631571  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 1411681 - 1411641
Alignment:
Q  41 ttttatagaaaataattataatgtttgttgttaaaactttg 81  Q
    |||| ||||||||||||||||||||||| |||| |||||||    
T  1411681 ttttttagaaaataattataatgtttgtggttagaactttg 1411641  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 324
Target Start/End: Original strand, 13372164 - 13372196
Alignment:
Q  292 aaactatttgcgttgtgcaacccccaaatttta 324  Q
    ||||||||||| |||||||||||||||||||||    
T  13372164 aaactatttgccttgtgcaacccccaaatttta 13372196  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 39879773 - 39879817
Alignment:
Q  46 tagaaaataattataatgtttgttgttaaaactttgctattttat 90  Q
    |||| ||||||||||||||||||||||||||| ||| ||||||||    
T  39879773 tagagaataattataatgtttgttgttaaaacattgttattttat 39879817  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 90
Target Start/End: Original strand, 4452491 - 4452530
Alignment:
Q  51 aataattataatgtttgttgttaaaactttgctattttat 90  Q
    |||||||||||||||| |||||||||| ||||||||||||    
T  4452491 aataattataatgttttttgttaaaacattgctattttat 4452530  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 12758955 - 12758906
Alignment:
Q  41 ttttatagaaaataattataatgtttgttgttaaaactttgctattttat 90  Q
    |||| ||||||||||||||||||||||||| || ||||| || |||||||    
T  12758955 ttttttagaaaataattataatgtttgttggtataacttcgcgattttat 12758906  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 35190018 - 35189979
Alignment:
Q  51 aataattataatgtttgttgttaaaactttgctattttat 90  Q
    ||||||||||||||||||||||| |||||||| |||||||    
T  35190018 aataattataatgtttgttgttagaactttgcgattttat 35189979  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 27534209 - 27534251
Alignment:
Q  102 gtatgaacaaataattagaagaactgctctaacaaaaataaga 144  Q
    ||||| ||||| ||||||||||| |||||||||||||||||||    
T  27534209 gtatggacaaaaaattagaagaagtgctctaacaaaaataaga 27534251  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 27576516 - 27576558
Alignment:
Q  102 gtatgaacaaataattagaagaactgctctaacaaaaataaga 144  Q
    ||||| ||||| ||||||||||| |||||||||||||||||||    
T  27576516 gtatggacaaaaaattagaagaaatgctctaacaaaaataaga 27576558  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 13172537 - 13172573
Alignment:
Q  54 aattataatgtttgttgttaaaactttgctattttat 90  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  13172537 aattataatgttttttgttagaactttgctattttat 13172573  T

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