View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14714_low_5 (Length: 317)

Name: NF14714_low_5
Description: NF14714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14714_low_5
NF14714_low_5
[»] chr3 (21 HSPs)
chr3 (1-150)||(35655082-35655231)
chr3 (159-314)||(30995955-30996110)
chr3 (155-314)||(25224695-25224854)
chr3 (159-290)||(27763741-27763872)
chr3 (155-254)||(38331184-38331283)
chr3 (155-314)||(48204297-48204456)
chr3 (159-272)||(1642644-1642757)
chr3 (156-269)||(20861289-20861402)
chr3 (225-314)||(38088631-38088720)
chr3 (155-306)||(48210946-48211097)
chr3 (157-273)||(55123134-55123250)
chr3 (156-276)||(39950246-39950366)
chr3 (155-314)||(22288231-22288390)
chr3 (155-253)||(25739144-25739243)
chr3 (173-295)||(40294627-40294749)
chr3 (229-274)||(22755680-22755725)
chr3 (155-277)||(11767143-11767265)
chr3 (171-274)||(14352590-14352696)
chr3 (233-278)||(20616145-20616190)
chr3 (224-276)||(9651084-9651136)
chr3 (158-274)||(46725461-46725576)
[»] chr7 (24 HSPs)
chr7 (155-314)||(29059801-29059960)
chr7 (155-314)||(31492099-31492258)
chr7 (178-314)||(8839290-8839426)
chr7 (198-314)||(13254130-13254246)
chr7 (173-314)||(19477254-19477394)
chr7 (204-314)||(28537386-28537496)
chr7 (157-314)||(21747028-21747184)
chr7 (185-297)||(2870991-2871103)
chr7 (224-314)||(2657891-2657981)
chr7 (166-259)||(30614679-30614772)
chr7 (185-272)||(24512664-24512751)
chr7 (199-314)||(40099302-40099417)
chr7 (180-290)||(23933662-23933772)
chr7 (197-314)||(7265341-7265458)
chr7 (198-253)||(14545000-14545055)
chr7 (223-289)||(4059747-4059812)
chr7 (155-289)||(35707868-35708001)
chr7 (224-297)||(27484104-27484177)
chr7 (155-239)||(37339719-37339803)
chr7 (223-273)||(31717919-31717969)
chr7 (223-255)||(3758004-3758036)
chr7 (225-297)||(7190415-7190487)
chr7 (208-276)||(40211987-40212055)
chr7 (198-314)||(46373669-46373785)
[»] chr4 (27 HSPs)
chr4 (155-314)||(31307052-31307211)
chr4 (155-314)||(38766085-38766244)
chr4 (155-314)||(14854601-14854760)
chr4 (157-314)||(35972339-35972496)
chr4 (155-277)||(46016182-46016304)
chr4 (173-297)||(35334102-35334226)
chr4 (155-278)||(51626292-51626415)
chr4 (155-277)||(9012303-9012425)
chr4 (173-314)||(45994518-45994659)
chr4 (210-314)||(38844209-38844313)
chr4 (227-297)||(11140470-11140540)
chr4 (180-273)||(17135133-17135226)
chr4 (199-290)||(13686621-13686713)
chr4 (158-242)||(33529325-33529409)
chr4 (178-274)||(46250564-46250660)
chr4 (221-275)||(13948644-13948698)
chr4 (182-244)||(31308363-31308425)
chr4 (205-297)||(7096109-7096201)
chr4 (199-274)||(2434595-2434670)
chr4 (155-252)||(32005132-32005229)
chr4 (199-243)||(47023469-47023513)
chr4 (177-297)||(51853711-51853829)
chr4 (225-296)||(14042843-14042914)
chr4 (223-274)||(56447176-56447227)
chr4 (171-297)||(22189390-22189516)
chr4 (157-221)||(15133464-15133528)
chr4 (224-312)||(41335729-41335817)
[»] scaffold0182 (1 HSPs)
scaffold0182 (155-306)||(26335-26486)
[»] chr8 (17 HSPs)
chr8 (155-314)||(2743929-2744088)
chr8 (155-314)||(4125010-4125169)
chr8 (155-312)||(13468731-13468888)
chr8 (161-297)||(12958077-12958213)
chr8 (198-297)||(15682942-15683041)
chr8 (155-314)||(30936000-30936159)
chr8 (157-296)||(19715713-19715853)
chr8 (199-289)||(36994530-36994620)
chr8 (198-314)||(35206996-35207112)
chr8 (178-297)||(16701388-16701507)
chr8 (155-259)||(7839239-7839343)
chr8 (159-297)||(30055991-30056129)
chr8 (216-314)||(11363265-11363362)
chr8 (224-297)||(4321559-4321632)
chr8 (197-262)||(8034157-8034222)
chr8 (209-297)||(10030971-10031059)
chr8 (230-278)||(23981534-23981582)
[»] chr6 (15 HSPs)
chr6 (155-314)||(12411144-12411303)
chr6 (155-278)||(12836883-12837006)
chr6 (157-314)||(21910201-21910357)
chr6 (156-297)||(28099256-28099397)
chr6 (224-314)||(31107548-31107638)
chr6 (179-271)||(31412161-31412253)
chr6 (230-314)||(423651-423735)
chr6 (198-289)||(29185314-29185405)
chr6 (197-312)||(5944840-5944955)
chr6 (198-273)||(25084071-25084146)
chr6 (223-290)||(31489535-31489602)
chr6 (202-269)||(26477732-26477799)
chr6 (210-255)||(3660688-3660733)
chr6 (223-271)||(24448204-24448252)
chr6 (230-278)||(27735509-27735557)
[»] chr5 (15 HSPs)
chr5 (155-314)||(10591923-10592082)
chr5 (155-314)||(31113330-31113489)
chr5 (156-269)||(5123485-5123598)
chr5 (155-306)||(22187984-22188133)
chr5 (157-276)||(30784974-30785093)
chr5 (224-314)||(2798370-2798459)
chr5 (224-314)||(2804537-2804626)
chr5 (158-314)||(12682631-12682787)
chr5 (173-243)||(36212963-36213033)
chr5 (183-314)||(10795332-10795461)
chr5 (225-296)||(18909357-18909428)
chr5 (173-274)||(18244620-18244721)
chr5 (202-245)||(29553604-29553647)
chr5 (231-276)||(2651539-2651584)
chr5 (180-244)||(32313117-32313181)
[»] chr1 (28 HSPs)
chr1 (158-314)||(16756078-16756234)
chr1 (156-314)||(22022116-22022274)
chr1 (156-273)||(9780976-9781093)
chr1 (155-290)||(18428128-18428262)
chr1 (155-277)||(28724705-28724827)
chr1 (223-297)||(32883624-32883698)
chr1 (155-272)||(36806649-36806766)
chr1 (157-250)||(42297430-42297523)
chr1 (157-274)||(7242795-7242912)
chr1 (158-306)||(45806240-45806388)
chr1 (180-251)||(33059737-33059808)
chr1 (179-297)||(31733701-31733819)
chr1 (223-297)||(40019254-40019328)
chr1 (160-276)||(39547355-39547471)
chr1 (180-274)||(12035585-12035680)
chr1 (198-273)||(36522265-36522340)
chr1 (208-275)||(36982390-36982457)
chr1 (155-239)||(15642526-15642610)
chr1 (209-297)||(25655304-25655392)
chr1 (230-314)||(29124741-29124825)
chr1 (185-314)||(10841013-10841143)
chr1 (178-275)||(28286442-28286540)
chr1 (223-274)||(24801417-24801468)
chr1 (232-314)||(17600561-17600643)
chr1 (243-297)||(21774616-21774670)
chr1 (205-246)||(19238835-19238876)
chr1 (204-273)||(35692522-35692591)
chr1 (180-276)||(46864125-46864221)
[»] chr2 (25 HSPs)
chr2 (155-314)||(31579215-31579374)
chr2 (158-314)||(5394393-5394548)
chr2 (155-314)||(42745102-42745261)
chr2 (212-314)||(44732616-44732718)
chr2 (197-314)||(12133258-12133375)
chr2 (159-314)||(18105353-18105507)
chr2 (159-274)||(9438126-9438241)
chr2 (227-314)||(37568785-37568872)
chr2 (197-290)||(993774-993866)
chr2 (210-297)||(7157511-7157598)
chr2 (199-269)||(13153953-13154023)
chr2 (155-276)||(37179987-37180103)
chr2 (198-296)||(34483476-34483572)
chr2 (198-272)||(39401098-39401172)
chr2 (199-276)||(2562375-2562452)
chr2 (200-289)||(17672652-17672741)
chr2 (156-256)||(24412914-24413013)
chr2 (210-314)||(33756973-33757077)
chr2 (201-268)||(32113780-32113847)
chr2 (199-272)||(17658500-17658573)
chr2 (155-260)||(17981548-17981652)
chr2 (210-259)||(39314497-39314546)
chr2 (237-289)||(25988641-25988693)
chr2 (155-290)||(38372980-38373113)
chr2 (232-296)||(38463969-38464033)
[»] scaffold0009 (1 HSPs)
scaffold0009 (235-312)||(32330-32407)


Alignment Details
Target: chr3 (Bit Score: 126; Significance: 6e-65; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 35655082 - 35655231
Alignment:
Q  1 attcaacctcttaaaaatcaaattattttagcttatcaaattagaaaaagggaattggtaatcaacttaagtccttgtggtataaatattttttattaca 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  35655082 attcaacctgttaaaaatcaaattattttagcttatcaaattagaaaaagggaattggcaatcaactttagtccttgtggtataaatattttttattaca 35655181  T
Q  101 cgacagaaataatgcacttgcggcctatcaaagaaatataataattcact 150  Q
    ||| |||||||||||||||||| ||||||||||||| |||||||||||||    
T  35655182 cgaaagaaataatgcacttgcgccctatcaaagaaagataataattcact 35655231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 159 - 314
Target Start/End: Original strand, 30995955 - 30996110
Alignment:
Q  159 tatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtcca 258  Q
    |||||||||| || |||| ||||||||||| |||| |  ||||||||||| | ||||||| |||||||||||||||||||||||||||| |||||| |||    
T  30995955 tatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccagatgggcggcagactctccctaagagttttaacgctgttgcatgccca 30996054  T
Q  259 aggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
    |||  | ||||||||||||  ||||||||||| |||||| || ||||| |||||||    
T  30996055 aggtcggattcgaacccaggaccttggttaagatagaagagacccgttccatctca 30996110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 314
Target Start/End: Complemental strand, 25224854 - 25224695
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatg 254  Q
    ||||||||||||||  | |||| ||||||||||| |||  |  ||||||||||||||||||||| ||   ||||| |||||||||||||||||||||||     
T  25224854 cgggtatcctccgcgtgcaactgcggagactaatcccttgagcattgtgggacctaaatgggcggcaagttctccttaagagttttaacgctgctgcatt 25224755  T
Q  255 tccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
     ||||  ||  ||||||||||||  ||||||||||| |||||| || |||||||||||||    
T  25224754 cccaaaacttgattcgaacccaggaccttggttaagctagaagagacccgtttcatctca 25224695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 159 - 290
Target Start/End: Complemental strand, 27763872 - 27763741
Alignment:
Q  159 tatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtcca 258  Q
    ||||||| || || |||| ||||||||||| |||| |  ||||||||||  |||||| || |||||||||||||||||||||||| ||| || ||| |||    
T  27763872 tatcctctgcgcgcaactgcggagactaatccctcgagcattgtgggactcaaatggacggcagactctccctaagagttttaacactgttgtatgccca 27763773  T
Q  259 aggctgtattcgaacccagagccttggttaag 290  Q
    |||||| ||||||||||||  |||||||||||    
T  27763772 aggctggattcgaacccaggaccttggttaag 27763741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 155 - 254
Target Start/End: Complemental strand, 38331283 - 38331184
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatg 254  Q
    ||||||||||||||  | |||| ||||||||||| ||||||| ||||||||||| ||||||||| ||  ||||| |||||||||||||||||||||||||    
T  38331283 cgggtatcctccgcgtgcaactgcggagactaatccctcaaacattgtgggacccaaatgggcggcaagctctctctaagagttttaacgctgctgcatg 38331184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 155 - 314
Target Start/End: Original strand, 48204297 - 48204456
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatg 254  Q
    |||||||||||||| || |||| |||| |||||| |||  |  ||||||| ||| |||||| |||||  ||||||||||| ||||||||| |||||||||    
T  48204297 cgggtatcctccgcgcgcaactgcggaaactaatcccttgagcattgtggaacccaaatggacgacaagctctccctaagggttttaacgttgctgcatg 48204396  T
Q  255 tccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
     ||||||||| |||||||||||   ||||||||||| |||||| ||  |||| |||||||    
T  48204397 cccaaggctggattcgaacccaagaccttggttaagctagaagagactcgttccatctca 48204456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 272
Target Start/End: Complemental strand, 1642757 - 1642644
Alignment:
Q  159 tatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtcca 258  Q
    |||||||||| || |||| |||| |||||| |||||| |||||||||||| |||||| ||  ||||||||||||| ||||||||| | ||||||||| ||    
T  1642757 tatcctccgcgcgcaactgcggaaactaatccctcaagtattgtgggacccaaatggacggtagactctccctaaaagttttaacacggctgcatgttca 1642658  T
Q  259 aggctgtattcgaa 272  Q
    |||||  |||||||    
T  1642657 aggctagattcgaa 1642644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 156 - 269
Target Start/End: Complemental strand, 20861402 - 20861289
Alignment:
Q  156 gggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgt 255  Q
    ||||||||||||| |  |||| ||||||||||| |||| |  ||| ||| ||| ||||||||| ||| |||||||||||||||||||||||||||||||     
T  20861402 gggtatcctccgcgcacaactgcggagactaatccctcgagcattatggaacccaaatgggcggcaggctctccctaagagttttaacgctgctgcatgc 20861303  T
Q  256 ccaaggctgtattc 269  Q
    |||| |||| ||||    
T  20861302 ccaatgctggattc 20861289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 225 - 314
Target Start/End: Complemental strand, 38088720 - 38088631
Alignment:
Q  225 tctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
    |||||||||||||||||||||| ||||||| |||| |||| |||||||||  || ||||||||||| |||||| || |||||||||||||    
T  38088720 tctccctaagagttttaacgctactgcatgcccaaagctggattcgaacctggaaccttggttaagctagaagagacccgtttcatctca 38088631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 306
Target Start/End: Original strand, 48210946 - 48211097
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatg 254  Q
    |||||||| |||||  | |||| ||||||  |||||||| | ||||||||||||||||| | || ||  |||||| |||||||||||||| |||||||||    
T  48210946 cgggtatcttccgcgtgcaactgcggagatcaattcctcgagtattgtgggacctaaatagacggcaagctctccataagagttttaacgttgctgcatg 48211045  T
Q  255 tccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtt 306  Q
      |||||||| ||||||||| | | ||||| ||||| |||||| || |||||    
T  48211046 ctcaaggctggattcgaaccaaaaaccttgattaagttagaagagacccgtt 48211097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 273
Target Start/End: Complemental strand, 55123250 - 55123134
Alignment:
Q  157 ggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtc 256  Q
    |||||||||||| || |||| || |||||||| |||| |  |||||| |||| |||||||   ||  |||||||||||| ||||||||||||||||| ||    
T  55123250 ggtatcctccgcgcgcaactgcgaagactaatccctcgagcattgtgagacccaaatgggtagcaagctctccctaagaattttaacgctgctgcatttc 55123151  T
Q  257 caaggctgtattcgaac 273  Q
    |||||||| ||||||||    
T  55123150 caaggctggattcgaac 55123134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 276
Target Start/End: Complemental strand, 39950366 - 39950246
Alignment:
Q  156 gggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgt 255  Q
    |||||||||||||| | |||| ||||||||||| | || |  ||||| ||| | |||||  ||||||| ||||||||| | |||||||||||||||||||    
T  39950366 gggtatcctccgcatgcaactgcggagactaatccttcgagcattgtcggatccaaatgaacgacagattctccctaaaaattttaacgctgctgcatgt 39950267  T
Q  256 ccaaggctgtattcgaaccca 276  Q
    ||||  ||| |||| ||||||    
T  39950266 ccaaaactggattctaaccca 39950246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 314
Target Start/End: Complemental strand, 22288390 - 22288231
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatg 254  Q
    |||||||||||||| |  |||| | |||||||||||||  | |||||||  ||  |||||| |||||   |||||||||||||||||||  || ||||||    
T  22288390 cgggtatcctccgcgcacaactgcagagactaattccttgagtattgtgtaactcaaatggacgacaagttctccctaagagttttaacattgttgcatg 22288291  T
Q  255 tccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
    | |||||||| |||||||| |||  | ||||||||| |||||| ||| | | ||||||||    
T  22288290 ttcaaggctgaattcgaactcaggactttggttaagttagaagagattcatgtcatctca 22288231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 253
Target Start/End: Complemental strand, 25739243 - 25739144
Alignment:
Q  155 cgggtatcctccgcacgtaactc-cggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcat 253  Q
    ||||||||||||||||| ||||  ||||||||||||  || | | || ||||||| |||||||||  | |||||||||||||||||||| ||| ||||||    
T  25739243 cgggtatcctccgcacgcaacttgcggagactaatttatcgagtcttatgggacccaaatgggcggaaaactctccctaagagttttaatgctcctgcat 25739144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 295
Target Start/End: Complemental strand, 40294749 - 40294627
Alignment:
Q  173 aactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaa 272  Q
    |||| ||||||||||| | || | ||||||||||   ||||| ||| ||  || |||||||||||||||||  || ||||| |||||||||| |||||||    
T  40294749 aactgcggagactaatccttcgagtattgtgggattcaaatgagcggcaagctttccctaagagttttaacattgttgcatatccaaggctggattcgaa 40294650  T
Q  273 cccagagccttggttaaggtaga 295  Q
    | |||  ||||| ||||||||||    
T  40294649 ctcaggaccttgattaaggtaga 40294627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 22755725 - 22755680
Alignment:
Q  229 cctaagagttttaacgctgctgcatgtccaaggctgtattcgaacc 274  Q
    |||||||||||||| ||||||||||| ||||||||| |||||||||    
T  22755725 cctaagagttttaatgctgctgcatgcccaaggctggattcgaacc 22755680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 277
Target Start/End: Complemental strand, 11767265 - 11767143
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatg 254  Q
    |||||||||||| | ||||| | || |||||||| | ||||||||||||||||  ||||||||| ||  | ||  |||||||||||||   || ||||||    
T  11767265 cgggtatcctccacgcgtaattgcgaagactaatccttcaaatattgtgggactcaaatgggcggcaagcacttgctaagagttttaatattgttgcatg 11767166  T
Q  255 tccaaggctgtattcgaacccag 277  Q
     |||||| |  ||||||||||||    
T  11767165 cccaaggatagattcgaacccag 11767143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 274
Target Start/End: Complemental strand, 14352696 - 14352590
Alignment:
Q  171 gtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgc----tgcatgtccaaggctgta 266  Q
    |||||| ||||||||||| |||| | ||||| || | | |||||| |||||  |||||| ||||||||||||| ||||    |||||||||||||||| |    
T  14352696 gtaactgcggagactaatccctcgagtattg-ggtatccaaatggacgacaagctctccgtaagagttttaacactgctgcatgcatgtccaaggctgga 14352598  T
Q  267 ttcgaacc 274  Q
    ||||||||    
T  14352597 ttcgaacc 14352590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 20616145 - 20616190
Alignment:
Q  233 agagttttaacgctgctgcatgtccaaggctgtattcgaacccaga 278  Q
    ||||||| |||||||||||||||||||| ||| ||||||| |||||    
T  20616145 agagtttcaacgctgctgcatgtccaagactggattcgaatccaga 20616190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 276
Target Start/End: Complemental strand, 9651136 - 9651084
Alignment:
Q  224 ctctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaaccca 276  Q
    ||||||||||   |||||||| || |||||||||||||||| |||||||||||    
T  9651136 ctctccctaactattttaacgttgttgcatgtccaaggctgaattcgaaccca 9651084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 274
Target Start/End: Complemental strand, 46725576 - 46725461
Alignment:
Q  158 gtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtcc 257  Q
    ||||||||||| |||||||   ||||||||| ||||||  ||||||| ||| | |||| |  || ||| |||||||||||||||||| || || ||| ||    
T  46725576 gtatcctccgcgcgtaactgaagagactaatccctcaagcattgtgg-acccagatggacagcaaactatccctaagagttttaacgttgttgaatgccc 46725478  T
Q  258 aaggctgtattcgaacc 274  Q
    ||||||| |||| ||||    
T  46725477 aaggctgcattcaaacc 46725461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 155 - 314
Target Start/End: Complemental strand, 29059960 - 29059801
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatg 254  Q
    |||||||||||||| || |||| ||||||||||| ||||||  ||||||||||| ||||||||| ||| |||||||||||||||||||| ||||||||||    
T  29059960 cgggtatcctccgcgcgcaactgcggagactaatccctcaagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatg 29059861  T
Q  255 tccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
     ||||||||| ||||||||||||  ||||||||||| |||||| || ||||| |||||||    
T  29059860 cccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccatctca 29059801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 155 - 314
Target Start/End: Complemental strand, 31492258 - 31492099
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatg 254  Q
    |||||||||||||| || |||| ||||||||||| |||| |  ||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||    
T  31492258 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagttttaacactgctgcatg 31492159  T
Q  255 tccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
     ||||||||| ||||||||||||  ||||||||||| |||||| || ||||| |||||||    
T  31492158 cccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccatctca 31492099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 178 - 314
Target Start/End: Original strand, 8839290 - 8839426
Alignment:
Q  178 cggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccag 277  Q
    ||||||||||| |||| | |||||||||| |||||| |||| |||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  8839290 cggagactaatccctcgagtattgtgggatctaaataggcggcagattctccctaagagttttaacgctgctgcatgcccaaggctggattcgaacccag 8839389  T
Q  278 agccttggttaaggtagaagggatccgtttcatctca 314  Q
      ||||||||||| |||||| || |||||||||||||    
T  8839390 gaccttggttaagctagaagagacccgtttcatctca 8839426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 198 - 314
Target Start/End: Original strand, 13254130 - 13254246
Alignment:
Q  198 attgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaag 297  Q
    ||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||| | ||||||| |||||||| |||  ||||||||||| ||||||    
T  13254130 attgtgggacctaaatgggcggcaggctctccctaagagtttcaacgctgctgcatgcctaaggctggattcgaactcaggaccttggttaagctagaag 13254229  T
Q  298 ggatccgtttcatctca 314  Q
     || ||||| |||||||    
T  13254230 agacccgttccatctca 13254246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 173 - 314
Target Start/End: Original strand, 19477254 - 19477394
Alignment:
Q  173 aactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaa 272  Q
    |||| ||||||||||| |||||   ||||||||||| |||||| || ||  |||||||||||||||||||| ||| |||||| ||||||||| |||| ||    
T  19477254 aactgcggagactaatccctcagc-attgtgggacccaaatggccggcaagctctccctaagagttttaacactgttgcatgcccaaggctggattcaaa 19477352  T
Q  273 cccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
    |||||| ||||||||||| |||||| || ||||| |||||||    
T  19477353 cccagaaccttggttaagctagaagagacccgttccatctca 19477394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 204 - 314
Target Start/End: Complemental strand, 28537496 - 28537386
Alignment:
Q  204 ggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaagggatcc 303  Q
    ||||| ||||||||| ||| ||||||||||||||||||||| || |||||| ||||||||| ||||||||||| | ||||| ||||| |||||| || ||    
T  28537496 ggacccaaatgggcggcaggctctccctaagagttttaacgttgttgcatgcccaaggctggattcgaacccaaaaccttgattaagttagaagagaccc 28537397  T
Q  304 gtttcatctca 314  Q
    ||| |||||||    
T  28537396 gttccatctca 28537386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 314
Target Start/End: Original strand, 21747028 - 21747184
Alignment:
Q  157 ggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtc 256  Q
    |||||||||||| |  |||| || |||||||| |||| |  ||||||||||| ||||||| |  || ||||||||||||||||||||||||| ||||| |    
T  21747028 ggtatcctccgcgcacaactgcgaagactaatccctcgaggattgtgggacccaaatgggtggtaggctctccctaagagttttaacgctgcagcatgcc 21747127  T
Q  257 caaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
     || |||| ||||| ||||||  ||||||||||| |||||| || ||||| |||||||    
T  21747128 taaagctggattcg-acccaggaccttggttaagttagaagagacccgttccatctca 21747184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 2870991 - 2871103
Alignment:
Q  185 taattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttg 284  Q
    |||||| || ||| |||| ||||||||||| |||||| |||||| | ||||||||||||  || |||||||| |||| || |||| |||||||| |||||    
T  2870991 taattcatcgaattttgtaggacctaaatgagcgacaaactctctccaagagttttaacattgttgcatgtctaaggatggattcaaacccagaaccttg 2871090  T
Q  285 gttaaggtagaag 297  Q
    |||||| ||||||    
T  2871091 gttaagttagaag 2871103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 314
Target Start/End: Original strand, 2657891 - 2657981
Alignment:
Q  224 ctctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
    |||||| |||||||||||||| ||||||||| ||||||||||||| |||| ||| |||||| ||||| |||||| ||  |||| |||||||    
T  2657891 ctctccttaagagttttaacgttgctgcatgcccaaggctgtatttgaactcagggccttgattaagttagaagagactcgttccatctca 2657981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 166 - 259
Target Start/End: Original strand, 30614679 - 30614772
Alignment:
Q  166 cgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaa 259  Q
    |||||| |||| | ||||||||||||||||   || || |||||||||| |||||| |||||| |||||||||||||||||| |||||| ||||    
T  30614679 cgcacgcaactgccgagactaattcctcaagctttctgagacctaaatgagcgacaaactctctctaagagttttaacgctgatgcatgcccaa 30614772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 272
Target Start/End: Complemental strand, 24512751 - 24512664
Alignment:
Q  185 taattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaa 272  Q
    ||||||||||| | || ||||||| |||||| || || |||||||| ||||||||||||| || || |||||||||| ||||||||||    
T  24512751 taattcctcaagtcttttgggacccaaatggacgtcacactctccccaagagttttaacgttgttggatgtccaaggttgtattcgaa 24512664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 314
Target Start/End: Original strand, 40099302 - 40099417
Alignment:
Q  199 ttgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaagg 298  Q
    |||||||||  ||||||||| ||  ||||||||||||||||||| |||||||||| ||||| |||| |||||||  |||   ||| |||||| ||||||     
T  40099302 ttgtgggactcaaatgggcggcaagctctccctaagagttttaatgctgctgcatatccaaagctggattcgaattcaggatcttagttaagctagaaga 40099401  T
Q  299 gatccgtttcatctca 314  Q
    || ||||| |||||||    
T  40099402 gacccgttccatctca 40099417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 290
Target Start/End: Original strand, 23933662 - 23933772
Alignment:
Q  180 gagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagag 279  Q
    ||||||||| |||||| |||||| | ||||||||||||| || ||||||||||| |||||||| |||  |||| |  |||| ||| ||||||||||||      
T  23933662 gagactaatccctcaagtattgtcgaacctaaatgggcggcaaactctccctaaaagttttaatgctcttgcaagctcaagactggattcgaacccagga 23933761  T
Q  280 ccttggttaag 290  Q
    |||| ||||||    
T  23933762 ccttagttaag 23933772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 314
Target Start/End: Original strand, 7265341 - 7265458
Alignment:
Q  197 tattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaa 296  Q
    |||||||||||| ||||| ||  || |||||||||||||||||||||   |||||||| ||||| ||  || |||||||| | | ||||||||| |||||    
T  7265341 tattgtgggacccaaatgagcagcaaactctccctaagagttttaacatcgctgcatgcccaagactagatccgaacccaaaactttggttaagctagaa 7265440  T
Q  297 gggatccgtttcatctca 314  Q
    | || |||| ||||||||    
T  7265441 gagacccgtgtcatctca 7265458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 253
Target Start/End: Complemental strand, 14545055 - 14545000
Alignment:
Q  198 attgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcat 253  Q
    ||||||||||| |||||| || ||| |||||||||||||||||||| |||||||||    
T  14545055 attgtgggacccaaatggacggcaggctctccctaagagttttaacactgctgcat 14545000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 289
Target Start/End: Original strand, 4059747 - 4059812
Alignment:
Q  223 actctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaa 289  Q
    |||||| ||||||||||||||| || ||||||  ||||||||||||||||| |||| ||||||||||    
T  4059747 actctctctaagagttttaacgatgttgcatgctcaaggctgtattcgaactcaga-ccttggttaa 4059812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 289
Target Start/End: Complemental strand, 35708001 - 35707868
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatg 254  Q
    |||||||||||| | || |||| | ||||||||| |||| |  ||||| ||| ||||||||| | ||   ||||||||||| |||||||| || ||||||    
T  35708001 cgggtatcctccacgcgcaactgcagagactaatccctcgagcattgtaggatctaaatgggaggcaagttctccctaagaattttaacgttgttgcatg 35707902  T
Q  255 tccaaggctgtattcgaacccagagccttggttaa 289  Q
    ||||| | || ||||||| ||||| ||||||||||    
T  35707901 tccaaagttggattcgaa-ccagaaccttggttaa 35707868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 297
Target Start/End: Original strand, 27484104 - 27484177
Alignment:
Q  224 ctctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaag 297  Q
    ||||||| ||||||||||||||||||||||| ||| ||||| |||  ||| |||  ||||||||||| ||||||    
T  27484104 ctctccccaagagttttaacgctgctgcatgcccatggctggatttaaactcaggaccttggttaagctagaag 27484177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 239
Target Start/End: Original strand, 37339719 - 37339803
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttt 239  Q
    |||||||||||||  || |||| ||||||||||| |||| |  ||| ||||||| |||| |||| ||||||||| ||||||||||    
T  37339719 cgggtatcctccgtgcgcaactgcggagactaatccctcgagcattatgggacccaaataggcggcagactctcactaagagttt 37339803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 31717919 - 31717969
Alignment:
Q  223 actctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaac 273  Q
    ||||| |||||||||||||||| ||||||||||| |||| || ||||||||    
T  31717919 actcttcctaagagttttaacgttgctgcatgtctaaggttggattcgaac 31717969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 3758004 - 3758036
Alignment:
Q  223 actctccctaagagttttaacgctgctgcatgt 255  Q
    ||||||||||| |||||||||||||||||||||    
T  3758004 actctccctaaaagttttaacgctgctgcatgt 3758036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 297
Target Start/End: Original strand, 7190415 - 7190487
Alignment:
Q  225 tctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaag 297  Q
    ||||||||| ||||||||| | |||||||| |||| |||| |||| ||| || | ||||||||||| ||||||    
T  7190415 tctccctaaaagttttaacacggctgcatgcccaatgctgaattcaaactcataaccttggttaagctagaag 7190487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 276
Target Start/End: Complemental strand, 40212055 - 40211987
Alignment:
Q  208 ctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaaccca 276  Q
    |||||| || |||| ||||| |||||||||||||||| || |||||| ||||| ||| ||| |||||||    
T  40212055 ctaaataggtgacaaactcttcctaagagttttaacgttgttgcatgcccaagactggatttgaaccca 40211987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 314
Target Start/End: Complemental strand, 46373785 - 46373669
Alignment:
Q  198 attgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaag 297  Q
    |||||| |||| |||| |||| ||  ||||||||| ||||||||||| || || ||| ||||| ||| ||||||||||||   |||| ||||| ||||||    
T  46373785 attgtgtgacccaaataggcggcaagctctccctacgagttttaacgatgttgtatgcccaagactggattcgaacccaggatcttgcttaagctagaag 46373686  T
Q  298 ggatccgtttcatctca 314  Q
     || |||  ||||||||    
T  46373685 agacccgcgtcatctca 46373669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 155 - 314
Target Start/End: Original strand, 31307052 - 31307211
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatg 254  Q
    |||||||||||||| || |||| ||||||||||| |||| |  ||||||||||| ||||||||| ||| |||||||||||||||||||| ||||||||||    
T  31307052 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatg 31307151  T
Q  255 tccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
     ||||||||| ||||||||||||  ||||||||||| |||||| || ||||| |||||||    
T  31307152 cccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccatctca 31307211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 155 - 314
Target Start/End: Complemental strand, 38766244 - 38766085
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatg 254  Q
    |||||||||||||| || |||| ||||||||||| |||| |  |||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  38766244 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgagacccaaatgggcggcagactctccctaagagttttaacgctgctgcatg 38766145  T
Q  255 tccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
     ||||||||| |||| |||||||  ||||||||||| |||||| ||  |||| |||||||    
T  38766144 cccaaggctggattcaaacccaggaccttggttaagctagaagagactcgttccatctca 38766085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 155 - 314
Target Start/End: Complemental strand, 14854760 - 14854601
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatg 254  Q
    |||||||||||||| || |||| | ||||||||| |||| |  ||||| ||||| ||||||||| ||  ||||||||||||||||||||| |||||||||    
T  14854760 cgggtatcctccgcgcgcaactgcagagactaatccctcgagaattgttggacccaaatgggcggcaagctctccctaagagttttaacgatgctgcatg 14854661  T
Q  255 tccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
     ||||||||| ||||||||||||| ||||||||||| |||||| || ||||| |||||||    
T  14854660 cccaaggctggattcgaacccagaaccttggttaagctagaagagaaccgttccatctca 14854601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 157 - 314
Target Start/End: Complemental strand, 35972496 - 35972339
Alignment:
Q  157 ggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtc 256  Q
    ||||||||||||||| |||| ||||||||||| |||| || || |||||||| ||||||||| || ||||||||||| |||||||||||||||| ||| |    
T  35972496 ggtatcctccgcacgcaactgcggagactaatccctcgaacatagtgggacccaaatgggcggcaaactctccctaatagttttaacgctgctgtatgcc 35972397  T
Q  257 caaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
    || ||||| |||||||||||   ||||||||||| |||||| |  ||||| |||||||    
T  35972396 catggctggattcgaacccaagaccttggttaagctagaagaggcccgttccatctca 35972339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 155 - 277
Target Start/End: Complemental strand, 46016304 - 46016182
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatg 254  Q
    |||||||||||| | || |||| ||||||||||||| || |  ||||||||||| ||||||||| ||| |||||||||||||||||||| ||||||||||    
T  46016304 cgggtatcctccacgcgcaactacggagactaattcttcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatg 46016205  T
Q  255 tccaaggctgtattcgaacccag 277  Q
     ||||||||| ||||||||||||    
T  46016204 cccaaggctggattcgaacccag 46016182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 173 - 297
Target Start/End: Original strand, 35334102 - 35334226
Alignment:
Q  173 aactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaa 272  Q
    |||| ||||||||||| |||| | |||||||||||| ||||||||| | ||||||| |||||||||||||| |||||||||| ||||||||| || ||||    
T  35334102 aactgcggagactaatccctcgagtattgtgggacccaaatgggcggcggactctctctaagagttttaactctgctgcatgcccaaggctgaatacgaa 35334201  T
Q  273 cccagagccttggttaaggtagaag 297  Q
    || ||| ||||||||||| ||||||    
T  35334202 ccaagaaccttggttaagctagaag 35334226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 155 - 278
Target Start/End: Original strand, 51626292 - 51626415
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatg 254  Q
    |||||||||||||| || |||| |||||||||||  ||| |  | ||||||||| |||||| || |||||||||||||| ||||||||| ||||||||||    
T  51626292 cgggtatcctccgcgcgcaactgcggagactaatctctcgagcactgtgggacccaaatggacggcagactctccctaaaagttttaacactgctgcatg 51626391  T
Q  255 tccaaggctgtattcgaacccaga 278  Q
     ||||||||| |||||||| ||||    
T  51626392 cccaaggctggattcgaactcaga 51626415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 155 - 277
Target Start/End: Complemental strand, 9012425 - 9012303
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatg 254  Q
    |||||||||||||| || |||| ||||||||||| |||| |  ||||||||||| || |||||| ||  |||||||||||||||| ||| ||||||||||    
T  9012425 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaagtgggcggcaagctctccctaagagtttgaacactgctgcatg 9012326  T
Q  255 tccaaggctgtattcgaacccag 277  Q
     ||||||||  ||||||||||||    
T  9012325 cccaaggctagattcgaacccag 9012303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 173 - 314
Target Start/End: Complemental strand, 45994659 - 45994518
Alignment:
Q  173 aactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaa 272  Q
    |||| |||||||||||  ||| |  |||||| |||| ||||||||| ||| ||||||||||||||||||||| || |||||| ||||||||| |||||||    
T  45994659 aactgcggagactaatctctcgagcattgtgagacccaaatgggcgtcaggctctccctaagagttttaacgttgttgcatgcccaaggctggattcgaa 45994560  T
Q  273 cccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
     ||||  ||||||||||| |||||| || | ||| |||||||    
T  45994559 tccaggaccttggttaagctagaagagacctgttccatctca 45994518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 314
Target Start/End: Original strand, 38844209 - 38844313
Alignment:
Q  210 aaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttca 309  Q
    ||||||||| |||||||| ||||||||||||||||||| |||||| |||| |||| |||||||| ||   ||||||||||| |||||| ||  |||| ||    
T  38844209 aaatgggcggcagactcttcctaagagttttaacgctgttgcatgcccaaagctggattcgaactcatgaccttggttaagctagaagagactcgttcca 38844308  T
Q  310 tctca 314  Q
    |||||    
T  38844309 tctca 38844313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 297
Target Start/End: Complemental strand, 11140540 - 11140470
Alignment:
Q  227 tccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaag 297  Q
    |||||||||||||||| ||||||||||| ||||||||| ||||||| ||||  ||||||||||| ||||||    
T  11140540 tccctaagagttttaaagctgctgcatgcccaaggctggattcgaaaccaggaccttggttaagctagaag 11140470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 180 - 273
Target Start/End: Complemental strand, 17135226 - 17135133
Alignment:
Q  180 gagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaac 273  Q
    ||||||||| |||| | | || ||||||  ||||| ||| || ||||||||||||||||||||||||||||||||  |||||||| ||||||||    
T  17135226 gagactaatccctcgagtcttctgggactcaaatgcgcggcaaactctccctaagagttttaacgctgctgcatgcacaaggctggattcgaac 17135133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 290
Target Start/End: Complemental strand, 13686713 - 13686621
Alignment:
Q  199 ttgtgggacctaaatgggcgacagactctccct-aagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaag 290  Q
    ||||| |||| |||||| || || ||||||||| ||||||||||||||||||||| | |||||| || ||||||||||||  |||||||||||    
T  13686713 ttgtgagacccaaatggacggcaaactctcccttaagagttttaacgctgctgcacgcccaaggatggattcgaacccaggaccttggttaag 13686621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 242
Target Start/End: Complemental strand, 33529409 - 33529325
Alignment:
Q  158 gtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaa 242  Q
    ||||||||||  || |||| ||||||||||| |||| | |||||||||||| ||||||||| ||  |||||||||||||||||||    
T  33529409 gtatcctccgtgcgcaactgcggagactaatccctccagtattgtgggacccaaatgggcggcaagctctccctaagagttttaa 33529325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 274
Target Start/End: Original strand, 46250564 - 46250660
Alignment:
Q  178 cggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacc 274  Q
    ||||||||||||| || |  || |||||||| ||||||||| ||| || ||| ||||||||||||| |||||||||| ||||| ||| |||||||||    
T  46250564 cggagactaattcttcgagcatcgtgggacccaaatgggcggcaggctttccataagagttttaacactgctgcatgcccaagactggattcgaacc 46250660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 221 - 275
Target Start/End: Original strand, 13948644 - 13948698
Alignment:
Q  221 agactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaaccc 275  Q
    ||||||||||||||||||||||| |||||||||  ||||||||| ||||||||||    
T  13948644 agactctccctaagagttttaacactgctgcatacccaaggctggattcgaaccc 13948698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 31308425 - 31308363
Alignment:
Q  182 gactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacg 244  Q
    ||||||| ||||||| |||||||||||||||| | || |||||||| ||||||||||||||||    
T  31308425 gactaatccctcaaacattgtgggacctaaatagacggcagactcttcctaagagttttaacg 31308363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 297
Target Start/End: Complemental strand, 7096201 - 7096109
Alignment:
Q  205 gacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaag 297  Q
    ||||||||||||||  |  ||||||||||||||||||||  ||||||||   |||| |||||||| |||||| | ||||||||||| ||||||    
T  7096201 gacctaaatgggcggtaagctctccctaagagttttaactttgctgcatactcaagactgtattcaaacccaaaaccttggttaagctagaag 7096109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 274
Target Start/End: Complemental strand, 2434670 - 2434595
Alignment:
Q  199 ttgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacc 274  Q
    |||| ||||||||||| |||||| ||| | | |||||||||||||| || || ||||||||||||| |||||||||    
T  2434670 ttgtaggacctaaatgagcgacaaacttttcgtaagagttttaacgttgttgtatgtccaaggctggattcgaacc 2434595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 252
Target Start/End: Original strand, 32005132 - 32005229
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgca 252  Q
    |||||||||||||| | ||| | |||||||||||  ||| |  ||| || || |||||| |||| |||||||||||||||||||||||| ||| ||||    
T  32005132 cgggtatcctccgcgcataattgcggagactaatctctcgagcattttgagatctaaataggcggcagactctccctaagagttttaacactgatgca 32005229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 47023513 - 47023469
Alignment:
Q  199 ttgtgggacctaaatgggcgacagactctccctaagagttttaac 243  Q
    |||||||||| |||||| ||||| |||||||||||||||||||||    
T  47023513 ttgtgggacccaaatggacgacaaactctccctaagagttttaac 47023469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 297
Target Start/End: Complemental strand, 51853829 - 51853711
Alignment:
Q  177 ccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaaccca 276  Q
    |||||||||||| |||| | ||||||| |||| |||||| |  || ||| ||| |||||||||||| |  |||||||| ||||||||| ||||||| |||    
T  51853829 ccggagactaatccctcgagtattgtgagaccaaaatggaccgcaaactttcc-taagagttttaaggaagctgcatgcccaaggctgaattcgaa-cca 51853732  T
Q  277 gagccttggttaaggtagaag 297  Q
    || | ||||||||| ||||||    
T  51853731 gaactttggttaagttagaag 51853711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 14042914 - 14042843
Alignment:
Q  225 tctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaa 296  Q
    |||||| |||||||| ||||| |||||||| ||||| ||  ||||||||||||| | ||||||||| |||||    
T  14042914 tctccccaagagtttaaacgcggctgcatgcccaagacttgattcgaacccagaacgttggttaagttagaa 14042843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 56447176 - 56447227
Alignment:
Q  223 actctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacc 274  Q
    ||||||||||||||||||||| |||||||||| |||  |||| |||||||||    
T  56447176 actctccctaagagttttaacactgctgcatgcccatagctggattcgaacc 56447227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 297
Target Start/End: Original strand, 22189390 - 22189516
Alignment:
Q  171 gtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcg 270  Q
    |||||| | |||||||||||||| |   |||||||||| | || |||| ||  |||| |||||||||||||| | |||||||||  ||||| || |||||    
T  22189390 gtaactacagagactaattcctcgagccttgtgggacccatataggcggcaatctctacctaagagttttaatgttgctgcatgcacaaggttggattcg 22189489  T
Q  271 aacccagagccttggttaaggtagaag 297  Q
    ||| | |  ||||||||||| ||||||    
T  22189490 aactctggaccttggttaagctagaag 22189516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 15133528 - 15133464
Alignment:
Q  157 ggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgaca 221  Q
    |||||||||||| || |||| |||||||||||  |||||| ||||||||||| ||| || |||||    
T  15133528 ggtatcctccgcgcgcaactgcggagactaatctctcaaacattgtgggacccaaacggacgaca 15133464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 312
Target Start/End: Original strand, 41335729 - 41335817
Alignment:
Q  224 ctctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatct 312  Q
    ||||| |||||| |||||||| |||||||||||||| |||  ||||||| ||| |   ||||||||| || ||| |||||||| |||||    
T  41335729 ctctctctaagatttttaacgttgctgcatgtccaatgctagattcgaatccataattttggttaagttaaaagagatccgttacatct 41335817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 155 - 306
Target Start/End: Complemental strand, 26486 - 26335
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatg 254  Q
    |||||||||||||| || |||| |||||||||||  ||| || ||||||||||| ||||||||| ||| |||||||||||||||||||| ||||||||||    
T  26486 cgggtatcctccgcgcgcaactgcggagactaatctctcgaacattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatg 26387  T
Q  255 tccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtt 306  Q
     ||||||||| ||||||||||||  ||||||||||| |||||| || |||||    
T  26386 cccaaggctggattcgaacccaggaccttggttaagctagaagagacccgtt 26335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 155 - 314
Target Start/End: Complemental strand, 2744088 - 2743929
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatg 254  Q
    |||||||||||||| || |||| ||||||||||| |||| |  ||||||||||| |||||| |||||  |||||||||||||||||||| ||||||||||    
T  2744088 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatggacgacatgctctccctaagagttttaacactgctgcatg 2743989  T
Q  255 tccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
     ||||||||| ||||||||||||  ||||||||||| |||||| || ||||| |||||||    
T  2743988 cccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccatctca 2743929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 155 - 314
Target Start/End: Original strand, 4125010 - 4125169
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatg 254  Q
    |||||||||||||| || |||| ||||||||||| |||| |  ||||||||||| ||||||||| ||| ||||||||||||||||||||  |||||||||    
T  4125010 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacagtgctgcatg 4125109  T
Q  255 tccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
     ||||||||  ||||||||||||  | ||||||||| |||||| || ||||| |||||||    
T  4125110 cccaaggcttgattcgaacccaggacattggttaagctagaagagacccgttccatctca 4125169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 155 - 312
Target Start/End: Original strand, 13468731 - 13468888
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatg 254  Q
    |||||||||||||  || |||| ||||||||||| | || |  ||||||||||  ||||||||| ||||||||| |||||||||||||||||||| ||||    
T  13468731 cgggtatcctccgtgcgcaactgcggagactaatccttcgagcattgtgggactcaaatgggcggcagactctctctaagagttttaacgctgctacatg 13468830  T
Q  255 tccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatct 312  Q
     ||||||||| ||||||||||||  ||||||||||| |||||| || ||||| |||||    
T  13468831 cccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccatct 13468888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 161 - 297
Target Start/End: Original strand, 12958077 - 12958213
Alignment:
Q  161 tcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaag 260  Q
    |||||||| ||  ||| ||||||||||| |||| |  ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||     
T  12958077 tcctccgcgcgctactgcggagactaatccctcgagcattgtgggacccaaatgggcgacaggctctccctaagagttttaacgctgctgcatgcccaat 12958176  T
Q  261 gctgtattcgaacccagagccttggttaaggtagaag 297  Q
    |||| |||| ||||||   ||||||||||| ||||||    
T  12958177 gctggattcaaacccatgaccttggttaagctagaag 12958213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 198 - 297
Target Start/End: Complemental strand, 15683041 - 15682942
Alignment:
Q  198 attgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaag 297  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||| |||||||| |||  ||||| ||||| ||||||    
T  15683041 attgtgggacctaaatgggcggcaggctctccctaagagttttaacgctgctgcatgcccaaggctggattcgaactcaggaccttgattaagctagaag 15682942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 155 - 314
Target Start/End: Complemental strand, 30936159 - 30936000
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatg 254  Q
    |||||| | ||||| || |||| ||||||||||| |||| || ||||| ||||| ||||||||| ||| ||||||||||||||||||||| |||||||||    
T  30936159 cgggtaacatccgcgcgcaactgcggagactaatccctcgaacattgtcggacccaaatgggcggcaggctctccctaagagttttaacgttgctgcatg 30936060  T
Q  255 tccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
       ||||||| |||||||| |||  ||||||||||| |||||| || ||||| |||||||    
T  30936059 cttaaggctggattcgaactcaggaccttggttaagttagaagagacccgttccatctca 30936000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 157 - 296
Target Start/End: Original strand, 19715713 - 19715853
Alignment:
Q  157 ggtatcctccgcacgtaactccggagactaattcc-tcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgt 255  Q
    ||||| |||||| || |||| ||||||||||| || || |  ||||||||||| ||||||||| ||  |||||||| ||||||||||||||||||||||     
T  19715713 ggtattctccgcgcgcaactgcggagactaatcccctcgagcattgtgggacccaaatgggcggcaagctctccctgagagttttaacgctgctgcatgc 19715812  T
Q  256 ccaaggctgtattcgaacccagagccttggttaaggtagaa 296  Q
    ||||||||| ||||||||||||  ||||||||||| |||||    
T  19715813 ccaaggctggattcgaacccaggaccttggttaagctagaa 19715853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 199 - 289
Target Start/End: Original strand, 36994530 - 36994620
Alignment:
Q  199 ttgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaa 289  Q
    |||||||||| ||||||||  || ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||    
T  36994530 ttgtgggacccaaatgggcagcaaactctccttaagagttttaacgctgctgcatgtccaaggctggattcgaacccaggaccttggttaa 36994620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 198 - 314
Target Start/End: Complemental strand, 35207112 - 35206996
Alignment:
Q  198 attgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaag 297  Q
    ||||||||||| |||||| |||||  || ||| ||||||||||||||||||||||||||||||| |  |||||||||||||  |||||||||| ||||||    
T  35207112 attgtgggacccaaatggacgacatgctttccttaagagttttaacgctgctgcatgtccaaggttaaattcgaacccagaatcttggttaagttagaag 35207013  T
Q  298 ggatccgtttcatctca 314  Q
     || | |||||||||||    
T  35207012 agacctgtttcatctca 35206996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 178 - 297
Target Start/End: Original strand, 16701388 - 16701507
Alignment:
Q  178 cggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccag 277  Q
    |||||||||||  ||| ||| |||||||||  |||||||| ||| |||||||||||||| ||||| ||| ||| ||||||||||||| ||||||||||||    
T  16701388 cggagactaatctctcgaatcttgtgggactcaaatgggctacaaactctccctaagaggtttaaagctactgtatgtccaaggctggattcgaacccag 16701487  T
Q  278 agccttggttaaggtagaag 297  Q
    | |||| |||||| ||||||    
T  16701488 aaccttagttaagatagaag 16701507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 259
Target Start/End: Original strand, 7839239 - 7839343
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatg 254  Q
    |||||||||||||| || |||| ||||||||||| |||| |  ||||||||||| ||||||||| ||  ||||||||||||||||||| |||||||||||    
T  7839239 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcatgctctccctaagagttttaaagctgctgcatg 7839338  T
Q  255 tccaa 259  Q
     ||||    
T  7839339 cccaa 7839343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 297
Target Start/End: Original strand, 30055991 - 30056129
Alignment:
Q  159 tatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtcca 258  Q
    ||||| ||||||| ||||   ||||||||| |||| |  ||||||| ||| |||||| || ||| ||||||||||||||||||| ||||||||||| | |    
T  30055991 tatcccccgcacgcaactaaagagactaatccctcgagcattgtggaacccaaatggacggcaggctctccctaagagttttaatgctgctgcatgccta 30056090  T
Q  259 aggctgtattcgaacccagagccttggttaaggtagaag 297  Q
    |||||| ||| |||||||   |||| |||||| ||||||    
T  30056091 aggctggatttgaacccatgaccttcgttaagctagaag 30056129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 314
Target Start/End: Complemental strand, 11363362 - 11363265
Alignment:
Q  216 gcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
    |||||| |||||||||| ||||||||||| || ||||||| |||||||| |||| ||| || |  |||||||||| |||||| |||  |||||||||||    
T  11363362 gcgacaaactctccctaggagttttaacgatgttgcatgttcaaggctgaattcaaactca-atacttggttaagttagaagagatttgtttcatctca 11363265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 297
Target Start/End: Original strand, 4321559 - 4321632
Alignment:
Q  224 ctctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaag 297  Q
    ||||||||||||||||||||| |  |||||||| ||| ||| |||| |||||||| ||||  ||||| ||||||    
T  4321559 ctctccctaagagttttaacgttattgcatgtctaagactggattcaaacccagaaccttacttaagctagaag 4321632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 8034157 - 8034222
Alignment:
Q  197 tattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggc 262  Q
    |||||||||||| |||||| |  ||  ||||||||||||||||||||| || |||||||| |||||    
T  8034157 tattgtgggacccaaatggactgcaagctctccctaagagttttaacgttgttgcatgtctaaggc 8034222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 10031059 - 10030971
Alignment:
Q  209 taaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaag 297  Q
    |||||||||| ||  ||||||||||||||||||||| || || |||||||| ||   |||||||| ||||   ||||||||| ||||||    
T  10031059 taaatgggcggcaagctctccctaagagttttaacgttgttggatgtccaatgcaagattcgaactcagaattttggttaagttagaag 10030971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 23981534 - 23981582
Alignment:
Q  230 ctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccaga 278  Q
    ||||||||||||||| | |||||||||||| |||| ||||||| |||||    
T  23981534 ctaagagttttaacgttcctgcatgtccaaagctgaattcgaatccaga 23981582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 155 - 314
Target Start/End: Complemental strand, 12411303 - 12411144
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatg 254  Q
    ||||||||| |||| || ||||  |||||||||| ||||||  |||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||    
T  12411303 cgggtatcccccgcgcgcaactgtggagactaatccctcaagcattgtgggacttaaatgggcggcagactcttcctaagagttttaacgctgctgcatg 12411204  T
Q  255 tccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
     ||||||||| |||||||| |||  ||||||||||| |||||| || | ||| |||||||    
T  12411203 cccaaggctggattcgaactcaggaccttggttaagttagaagagacctgttccatctca 12411144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 155 - 278
Target Start/End: Original strand, 12836883 - 12837006
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatg 254  Q
    |||||||||||||| || ||||  |||||||||| ||||||  ||||||||||| ||||||||| |   |||||||||||||||||||||||||||||||    
T  12836883 cgggtatcctccgcgcgcaactggggagactaatccctcaagcattgtgggacccaaatgggcggcgagctctccctaagagttttaacgctgctgcatg 12836982  T
Q  255 tccaaggctgtattcgaacccaga 278  Q
     | ||||||| |||||||||||||    
T  12836983 cctaaggctggattcgaacccaga 12837006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 157 - 314
Target Start/End: Complemental strand, 21910357 - 21910201
Alignment:
Q  157 ggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtc 256  Q
    ||||||||||||  | |||| ||||||||||| ||| |  |||||||||||||||||| ||| ||||||||| ||||||||||||||| || |||||| |    
T  21910357 ggtatcctccgcgtgcaactgcggagactaatccctgag-tattgtgggacctaaatgagcggcagactctctctaagagttttaacgatgttgcatgcc 21910259  T
Q  257 caaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
    |||||||| ||||||||||||   |||||||||| |||||| ||   |||||||||||    
T  21910258 caaggctggattcgaacccaggatcttggttaagctagaagagacttgtttcatctca 21910201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 156 - 297
Target Start/End: Complemental strand, 28099397 - 28099256
Alignment:
Q  156 gggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgt 255  Q
    ||||||||||||| || |||| ||||||||||| |||| |  ||| ||| ||  |||||| ||||| | ||||||||| ||||||||| ||||||||||     
T  28099397 gggtatcctccgctcgcaactgcggagactaatccctcgagcattatggaactcaaatggacgacaaattctccctaaaagttttaacactgctgcatgc 28099298  T
Q  256 ccaaggctgtattcgaacccagagccttggttaaggtagaag 297  Q
    ||||||||| ||||||||||||  |||| |||||||||||||    
T  28099297 ccaaggctggattcgaacccaggaccttagttaaggtagaag 28099256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 224 - 314
Target Start/End: Original strand, 31107548 - 31107638
Alignment:
Q  224 ctctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
    ||||||| |||||||||||||||| ||||||||||| |||| |||||||| |||| |||| |||||| |||||| || || ||||||||||    
T  31107548 ctctcccaaagagttttaacgctgttgcatgtccaatgctggattcgaactcagaaccttagttaagttagaagagacccatttcatctca 31107638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 271
Target Start/End: Complemental strand, 31412253 - 31412161
Alignment:
Q  179 ggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcga 271  Q
    ||||||||||| ||| |  ||||||| ||| ||||||||| |||||||||||||||||||||||| |||||||| | |||| |||| ||||||    
T  31412253 ggagactaatttctcgagcattgtggaacccaaatgggcggcagactctccctaagagttttaacactgctgcacgcccaaagctgaattcga 31412161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 314
Target Start/End: Complemental strand, 423735 - 423651
Alignment:
Q  230 ctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
    ||||||||||||||||||| ||||| ||||||||| |||| |||||| | ||||||||||  |||||| |||| ||| |||||||    
T  423735 ctaagagttttaacgctgcagcatgcccaaggctggattcaaacccaaaaccttggttaaactagaagagatctgttccatctca 423651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 289
Target Start/End: Complemental strand, 29185405 - 29185314
Alignment:
Q  198 attgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaa 289  Q
    |||||| ||||||||||| ||| | | |||||||||||||||||||| || |||||||| || |||| ||||||||| ||| |||| |||||    
T  29185405 attgtgagacctaaatggacgatatattctccctaagagttttaacgttgatgcatgtctaatgctggattcgaacctagaaccttagttaa 29185314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 312
Target Start/End: Complemental strand, 5944955 - 5944840
Alignment:
Q  197 tattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaa 296  Q
    |||||| ||| ||||||||||| || ||||||||||| |||||||||  || | |||||| ||| ||| |||||||| |||  ||||||||||| || ||    
T  5944955 tattgtaggatctaaatgggcggcaaactctccctaaaagttttaacaatgttacatgtcaaagactgaattcgaactcaggaccttggttaagttaaaa 5944856  T
Q  297 gggatccgtttcatct 312  Q
    | || |||| ||||||    
T  5944855 gagacccgtatcatct 5944840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 273
Target Start/End: Complemental strand, 25084146 - 25084071
Alignment:
Q  198 attgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaac 273  Q
    ||||||| || |||||||  ||||  ||||||||||||||||||||  ||||||||||||||| ||| ||||||||    
T  25084146 attgtggaacttaaatggatgacaagctctccctaagagttttaacattgctgcatgtccaagactgaattcgaac 25084071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 290
Target Start/End: Complemental strand, 31489602 - 31489535
Alignment:
Q  223 actctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaag 290  Q
    ||||||||||| |||||||||| ||||||||  |||| ||||||||| |||||||| ||||| |||||    
T  31489602 actctccctaaaagttttaacgttgctgcatacccaaagctgtattcaaacccagaaccttgattaag 31489535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 269
Target Start/End: Original strand, 26477732 - 26477799
Alignment:
Q  202 tgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattc 269  Q
    |||||| |||||||| | || ||||||||||||| |||||||| |||||||| ||| |||||| ||||    
T  26477732 tgggacttaaatgggtggcaaactctccctaagaattttaacgttgctgcatttccgaggctggattc 26477799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 3660688 - 3660733
Alignment:
Q  210 aaatgggcgacagactctccctaagagttttaacgctgctgcatgt 255  Q
    ||||| |||||| |||||| |||||||||||||| |||||||||||    
T  3660688 aaatgagcgacaaactctctctaagagttttaacactgctgcatgt 3660733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 24448204 - 24448252
Alignment:
Q  223 actctccctaagagttttaacgctgctgcatgtccaaggctgtattcga 271  Q
    ||||||||||||| |||||||  ||||||||||| ||||||| ||||||    
T  24448204 actctccctaagaattttaactatgctgcatgtctaaggctgcattcga 24448252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 27735557 - 27735509
Alignment:
Q  230 ctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccaga 278  Q
    |||||||||||||| | ||| ||||||||||| ||||||||||| ||||    
T  27735557 ctaagagttttaacaccgctccatgtccaaggttgtattcgaactcaga 27735509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 155 - 314
Target Start/End: Complemental strand, 10592082 - 10591923
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatg 254  Q
    |||||||||||||| || |||| | ||||||||| |||| |  ||||||||||  ||||||||| |||||||||||||||||||||||| ||||||||||    
T  10592082 cgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgggactcaaatgggcggcagactctccctaagagttttaacactgctgcatg 10591983  T
Q  255 tccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
     ||||||||| ||||||||||||  ||||||||||  |||||| || ||||| |||||||    
T  10591982 cccaaggctggattcgaacccaggaccttggttaatctagaagagacccgttccatctca 10591923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 155 - 314
Target Start/End: Complemental strand, 31113489 - 31113330
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatg 254  Q
    |||||||||| ||| || |||| ||||||||||| |||| | |||||||||| | |||||||||  || |||||||||||||||||||| ||||||||||    
T  31113489 cgggtatccttcgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatg 31113390  T
Q  255 tccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
     ||||||||| ||||||||| ||| ||||  ||||| || ||  || |||||||||||||    
T  31113389 cccaaggctgaattcgaacctagaaccttaattaagctaaaaaagacccgtttcatctca 31113330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 156 - 269
Target Start/End: Original strand, 5123485 - 5123598
Alignment:
Q  156 gggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgt 255  Q
    ||||||||||||| || |||| ||||||||||| |||| |  ||||||||||| ||||||||| ||| |||||||||||||||||||| ||||||||||     
T  5123485 gggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgc 5123584  T
Q  256 ccaaggctgtattc 269  Q
    ||||||||| ||||    
T  5123585 ccaaggctgaattc 5123598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 155 - 306
Target Start/End: Original strand, 22187984 - 22188133
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatg 254  Q
    |||||||||||||| || |||| ||||||||||| |||| | |||||||||||| |||| |||| ||||||||||  |||||||||||||||| || |||    
T  22187984 cgggtatcctccgcgcgcaactgcggagactaatccctctagtattgtgggacccaaataggcggcagactctcc--aagagttttaacgctgttgtatg 22188081  T
Q  255 tccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtt 306  Q
     ||||||||| |||| ||||||   ||||||||||| |||||| ||| ||||    
T  22188082 cccaaggctggattcaaacccaataccttggttaagttagaagagattcgtt 22188133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 157 - 276
Target Start/End: Original strand, 30784974 - 30785093
Alignment:
Q  157 ggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtc 256  Q
    |||||||||||| || |||| ||||||||||| |||  || |||||| |||||||||||  | |||| |||||||||||||||||||| |||||||||||    
T  30784974 ggtatcctccgcgcgcaactgcggagactaatcccttgaacattgtgagacctaaatggatggcagattctccctaagagttttaacgttgctgcatgtc 30785073  T
Q  257 caaggctgtattcgaaccca 276  Q
    ||| |||| |||||||||||    
T  30785074 caaagctggattcgaaccca 30785093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 224 - 314
Target Start/End: Original strand, 2798370 - 2798459
Alignment:
Q  224 ctctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
    |||||||||| ||||||||||||||||||||  ||||| || ||||||||||||| ||||||||||| ||||| | | |||||||||||||    
T  2798370 ctctccctaaaagttttaacgctgctgcatgctcaaggttggattcgaacccagaaccttggttaagctagaa-gaaaccgtttcatctca 2798459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 314
Target Start/End: Original strand, 2804537 - 2804626
Alignment:
Q  224 ctctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
    |||||||||| ||||||||||||||||||||  ||||| || ||||||||||| | ||||||||||| ||||| | | |||||||||||||    
T  2804537 ctctccctaaaagttttaacgctgctgcatgctcaaggttggattcgaacccaaaaccttggttaagctagaa-gaaaccgtttcatctca 2804626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 314
Target Start/End: Complemental strand, 12682787 - 12682631
Alignment:
Q  158 gtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtcc 257  Q
    ||||||||||| || |||| || ||||||||||||| ||||| ||||||   || ||  |||||   |||||| ||||||||||||| || ||||||  |    
T  12682787 gtatcctccgcgcgcaactgcgaagactaattcctcgaatatggtgggattcaattgaacgacaagttctcccgaagagttttaacgttgttgcatgctc 12682688  T
Q  258 aaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
    ||||||| |||||||| |||| | ||| ||||| |||||| ||  ||||||||||||    
T  12682687 aaggctggattcgaactcagaacattgcttaagctagaagagactcgtttcatctca 12682631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 36213033 - 36212963
Alignment:
Q  173 aactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaac 243  Q
    |||| ||||||| ||| |||| |  ||||||||||||||||||||| || |||||||||||||||||||||    
T  36213033 aactgcggagaccaatccctcgagcattgtgggacctaaatgggcggcaaactctccctaagagttttaac 36212963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 314
Target Start/End: Original strand, 10795332 - 10795461
Alignment:
Q  183 actaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagcct 282  Q
    |||||| |||||||| |||||||||| ||||||||| || | ||||| | |||||||||| |||||| |||| | ||||||| ||| ||||  ||  |||    
T  10795332 actaatccctcaaattttgtgggacccaaatgggcggcacattctcctttagagttttaatgctgcttcatgcctaaggctggatttgaacttaggacct 10795431  T
Q  283 tggttaaggtagaagggatccgtttcatctca 314  Q
    ||||||||   |||| ||||||| ||||||||    
T  10795432 tggttaag--cgaagagatccgtatcatctca 10795461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 18909357 - 18909428
Alignment:
Q  225 tctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaa 296  Q
    ||||||||||||||||||| |||||||||  ||||||||| ||||||||| ||  ||||| ||||| |||||    
T  18909357 tctccctaagagttttaacactgctgcatacccaaggctggattcgaacctaggaccttgattaagctagaa 18909428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 274
Target Start/End: Complemental strand, 18244721 - 18244620
Alignment:
Q  173 aactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaa 272  Q
    |||| |||||||||||  ||||| |||||||| ||| ||||||| |  | | |||||| ||||||||||| |||||||||||| |||| ||| |||| ||    
T  18244721 aactgcggagactaatctctcaagtattgtggaacccaaatgggtggaaaaatctcccaaagagttttaatgctgctgcatgttcaagactgaattcaaa 18244622  T
Q  273 cc 274  Q
    ||    
T  18244621 cc 18244620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 245
Target Start/End: Complemental strand, 29553647 - 29553604
Alignment:
Q  202 tgggacctaaatgggcgacagactctccctaagagttttaacgc 245  Q
    ||||||| |||||| ||||| |||||||||||||||||||||||    
T  29553647 tgggacccaaatggacgacaaactctccctaagagttttaacgc 29553604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 2651539 - 2651584
Alignment:
Q  231 taagagttttaacgctgctgcatgtccaaggctgtattcgaaccca 276  Q
    ||||||||||||||||||||||| ||||||  || |||||||||||    
T  2651539 taagagttttaacgctgctgcatctccaagattgaattcgaaccca 2651584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 32313117 - 32313181
Alignment:
Q  180 gagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacg 244  Q
    ||||||||| |||| | |||||| |||| |||||||||  || ||||||| ||||||||||||||    
T  32313117 gagactaatccctcgagtattgtaggacttaaatgggcagcaaactctccttaagagttttaacg 32313181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 158 - 314
Target Start/End: Complemental strand, 16756234 - 16756078
Alignment:
Q  158 gtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtcc 257  Q
    ||||||||||| || |||| ||||||||||| |||| |  ||||||||||| |||||  |||||  ||||||||||||||||||||||| ||||||| ||    
T  16756234 gtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgcacgacatgctctccctaagagttttaacgcttctgcatgccc 16756135  T
Q  258 aaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
    || |||| |||| |||||||| ||||||||||| |||||| |||||||| |||||||    
T  16756134 aatgctgaattcaaacccagaaccttggttaagctagaagagatccgttccatctca 16756078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 156 - 314
Target Start/End: Complemental strand, 22022274 - 22022116
Alignment:
Q  156 gggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgt 255  Q
    ||||||||||| |  | |||| ||||||||||| |||| |||||||||||||| ||||||| | ||   |||||||||||||||||| |||||||||||     
T  22022274 gggtatcctccacgtgcaactgcggagactaatccctcgaatattgtgggacccaaatgggtggcaagttctccctaagagttttaatgctgctgcatgc 22022175  T
Q  256 ccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
    ||||||||| ||||||||||| | |||| |||||| |||||| || | ||| |||||||    
T  22022174 ccaaggctggattcgaacccacaaccttagttaagctagaagagacctgttccatctca 22022116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 156 - 273
Target Start/End: Original strand, 9780976 - 9781093
Alignment:
Q  156 gggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgt 255  Q
    |||||| |||||| |  |||| |||| |||||| |||| |  ||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||     
T  9780976 gggtattctccgcgcccaactacggatactaatccctcgagcattgtgggacccaaatgggcggccgactctccctaagagttttaacgctgctgcatgc 9781075  T
Q  256 ccaaggctgtattcgaac 273  Q
    ||||||||| ||||||||    
T  9781076 ccaaggctggattcgaac 9781093  T

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Target: chr1; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 155 - 290
Target Start/End: Original strand, 18428128 - 18428262
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatg 254  Q
    |||||||||||||| || |||| | ||||||||| |||| |  |||||||| || |||||| |  |||||||||||||| ||||||||| ||||||||||    
T  18428128 cgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtggggcc-aaatggacagcagactctccctaaaagttttaacactgctgcatg 18428226  T
Q  255 tccaaggctgtattcgaacccagagccttggttaag 290  Q
     |||||| || ||||||| ||||| |||||||||||    
T  18428227 cccaaggttggattcgaatccagaaccttggttaag 18428262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 155 - 277
Target Start/End: Complemental strand, 28724827 - 28724705
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatg 254  Q
    |||||||||||||| || || | ||||||||||| |||| || ||||| ||||  |||||| || |||||||| ||||||||||||||| ||| ||||||    
T  28724827 cgggtatcctccgcgcgcaattgcggagactaatccctcgaacattgtaggactcaaatggacggcagactcttcctaagagttttaacactgttgcatg 28724728  T
Q  255 tccaaggctgtattcgaacccag 277  Q
    | |||||||| ||||||| ||||    
T  28724727 ttcaaggctgaattcgaatccag 28724705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 223 - 297
Target Start/End: Original strand, 32883624 - 32883698
Alignment:
Q  223 actctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaag 297  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |  |||||||||| ||||||    
T  32883624 actctccctaagagttttaacgctgctgcatgtccaatgctggattcgaacccaaaatcttggttaagctagaag 32883698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 155 - 272
Target Start/End: Complemental strand, 36806766 - 36806649
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatg 254  Q
    ||||||||||||||  | |||| | ||||||||| |||| |  ||||||| ||| ||||||||| ||||| ||||||||||||||||||||| ||| |||    
T  36806766 cgggtatcctccgcgtgcaactgcagagactaatccctcgagcattgtggaacccaaatgggcggcagacactccctaagagttttaacgctactgtatg 36806667  T
Q  255 tccaaggctgtattcgaa 272  Q
     ||||||||| |||||||    
T  36806666 cccaaggctgaattcgaa 36806649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 42297430 - 42297523
Alignment:
Q  157 ggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctg 250  Q
    |||||||||||| || |||| ||||||||||| |||| |  |||||| |||| |||||| || |||||||||||||||||||||||||||||||    
T  42297430 ggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgagacccaaatggacggcagactctccctaagagttttaacgctgctg 42297523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 274
Target Start/End: Original strand, 7242795 - 7242912
Alignment:
Q  157 ggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtc 256  Q
    |||||| ||||| || |||| ||||||||||| |||| | |||| || ||   ||||||| |  |||||||||||||||||||||||| |||||||||||    
T  7242795 ggtatcttccgcgcgcaactgcggagactaatccctcgagtattatgagattcaaatgggaggtagactctccctaagagttttaacgttgctgcatgtc 7242894  T
Q  257 caaggctgtattcgaacc 274  Q
    |||| ||| |||||||||    
T  7242895 caagactggattcgaacc 7242912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 306
Target Start/End: Complemental strand, 45806388 - 45806240
Alignment:
Q  158 gtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtcc 257  Q
    ||||||||| | ||||||| | |||||||||   || ||||||||| ||| ||||| ||||  |  |||||||||||||||||||  |||||||||| ||    
T  45806388 gtatcctccacgcgtaactgcagagactaatcattcgaatattgtgagacttaaataggcggtatgctctccctaagagttttaaaactgctgcatgccc 45806289  T
Q  258 aaggctgtattcgaacccagagccttggttaaggtagaagggatccgtt 306  Q
    ||| ||| |||||||| |||  ||||||||||| |||||| || |||||    
T  45806288 aagactgaattcgaactcaggaccttggttaagatagaagagacccgtt 45806240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 33059737 - 33059808
Alignment:
Q  180 gagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgc 251  Q
    |||||||||||||||||  |||||||||| ||||||||| || ||||||| |||||||||||||| ||||||    
T  33059737 gagactaattcctcaaaccttgtgggacccaaatgggcggcaaactctccttaagagttttaacgttgctgc 33059808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 297
Target Start/End: Original strand, 31733701 - 31733819
Alignment:
Q  179 ggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccaga 278  Q
    |||||||||||| || | | |||||  ||| | |||| ||||| ||||||||||||||||||||| |||||||||| | || |||| ||||||||||| |    
T  31733701 ggagactaattcatccagtcttgtgacacccagatggacgacaaactctccctaagagttttaactctgctgcatgcctaatgctgaattcgaacccaaa 31733800  T
Q  279 gccttggttaaggtagaag 297  Q
     | ||||||||| ||||||    
T  31733801 acattggttaagttagaag 31733819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 297
Target Start/End: Complemental strand, 40019328 - 40019254
Alignment:
Q  223 actctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaag 297  Q
    |||||||| ||||||||||||| |||||||| |||||||||| ||||||||||| | ||||| ||||| ||||||    
T  40019328 actctccccaagagttttaacgttgctgcatatccaaggctgaattcgaacccaaaaccttgattaagttagaag 40019254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 276
Target Start/End: Original strand, 39547355 - 39547471
Alignment:
Q  160 atcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaa 259  Q
    |||||| || || |||| |||||| |||| | || || |||||| ||||||||| |||| ||||||| ||||||||||||| || ||||||||||  |||    
T  39547355 atcctctgcgcgcaactgcggagattaatccgtcgaacattgtgagacctaaataggcggcagactccccctaagagttttgacactgctgcatgctcaa 39547454  T
Q  260 ggctgtattcgaaccca 276  Q
    | ||| |||||||||||    
T  39547455 gactggattcgaaccca 39547471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 274
Target Start/End: Complemental strand, 12035680 - 12035585
Alignment:
Q  180 gagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagag-ttttaacgctgctgcatgtccaaggctgtattcgaacc 274  Q
    ||||||||| |||| |  ||||||||||| ||||||||| ||||||||||||||||| |||||||  || |||||| | ||||||| |||||||||    
T  12035680 gagactaatccctcgagcattgtgggacccaaatgggcggcagactctccctaagagtttttaacaatgttgcatgccaaaggctggattcgaacc 12035585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 273
Target Start/End: Original strand, 36522265 - 36522340
Alignment:
Q  198 attgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaac 273  Q
    ||||||||||  |||||| || || |||||||||||||||||||||  ||||||||||| ||| ||||||||||||    
T  36522265 attgtgggactcaaatggacggcaaactctccctaagagttttaaccttgctgcatgtctaagactgtattcgaac 36522340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 275
Target Start/End: Complemental strand, 36982457 - 36982390
Alignment:
Q  208 ctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaaccc 275  Q
    ||||||||  |||| |||||||||||||||||||||| || |||||||| ||||||| ||||||||||    
T  36982457 ctaaatggatgacaaactctccctaagagttttaacgttgttgcatgtctaaggctgaattcgaaccc 36982390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 239
Target Start/End: Complemental strand, 15642610 - 15642526
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttt 239  Q
    |||||||||||||| || |||| |||||| ||||  ||| |  ||||||||||| ||||||||| || |||||||||||||||||    
T  15642610 cgggtatcctccgcgcgcaactgcggagaataatctctcgagcattgtgggacccaaatgggcggcaaactctccctaagagttt 15642526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 297
Target Start/End: Original strand, 25655304 - 25655392
Alignment:
Q  209 taaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaag 297  Q
    ||||||| || || |||||| ||||||||||||||| ||||||||| |||| | |  ||||||||||||| ||||| ||||| ||||||    
T  25655304 taaatggacggcaaactctctctaagagttttaacgttgctgcatgcccaatgttaaattcgaacccagaaccttgattaagttagaag 25655392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 230 - 314
Target Start/End: Complemental strand, 29124825 - 29124741
Alignment:
Q  230 ctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
    ||||||||||||||||||||||||| |||| |||| |||||||| ||   || |||||||| |||||| ||  ||||||||||||    
T  29124825 ctaagagttttaacgctgctgcatgcccaatgctggattcgaactcatgaccctggttaagctagaagagactcgtttcatctca 29124741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 314
Target Start/End: Complemental strand, 10841143 - 10841013
Alignment:
Q  185 taattcctcaaatattgtgggacc-taaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagcctt 283  Q
    |||| ||||||  ||||||||||| |||||||| | ||   ||||||||||| |||||||| || | |||| ||||||||| ||| ||||||| |  |||    
T  10841143 taatccctcaagcattgtgggaccctaaatgggaggcaagttctccctaagaattttaacgttgttacatgcccaaggctgaatttgaacccaaaatctt 10841044  T
Q  284 ggttaaggtagaagggatccgtttcatctca 314  Q
    ||||||| |||||| || | |||||||||||    
T  10841043 ggttaagatagaagagacctgtttcatctca 10841013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 275
Target Start/End: Original strand, 28286442 - 28286540
Alignment:
Q  178 cggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgc--tgctgcatgtccaaggctgtattcgaaccc 275  Q
    ||||||||||||| ||   ||||||||||  |||||||||| |||||||||||||| | ||||||| |  | |||||||| |||||||| ||||||||||    
T  28286442 cggagactaattcatcgggtattgtgggatttaaatgggcggcagactctccctaaaaattttaacacatttctgcatgt-caaggctggattcgaaccc 28286540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 24801468 - 24801417
Alignment:
Q  223 actctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacc 274  Q
    |||||||||||||||||||||  ||||||||| | ||||||| |||||||||    
T  24801468 actctccctaagagttttaacagtgctgcatgcctaaggctggattcgaacc 24801417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 314
Target Start/End: Original strand, 17600561 - 17600643
Alignment:
Q  232 aagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
    ||||||||||||| || ||||||  |||||||| |||| ||||||   ||||||||||| |||||| || |||| ||||||||    
T  17600561 aagagttttaacgatgttgcatgctcaaggctgaattctaacccaagaccttggttaagctagaagagacccgtgtcatctca 17600643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 297
Target Start/End: Complemental strand, 21774670 - 21774616
Alignment:
Q  243 cgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaag 297  Q
    |||||||||||||||||| ||| ||||||||||| | ||||| ||||| ||||||    
T  21774670 cgctgctgcatgtccaagactggattcgaacccaaaaccttgattaagctagaag 21774616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 19238835 - 19238876
Alignment:
Q  205 gacctaaatgggcgacagactctccctaagagttttaacgct 246  Q
    ||||||||||| ||||| ||||||||||| ||||||||||||    
T  19238835 gacctaaatggacgacaaactctccctaaaagttttaacgct 19238876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 35692591 - 35692522
Alignment:
Q  204 ggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaac 273  Q
    ||||||||||| ||| || ||||||||||||||||||||||  | |||||| |||| | || ||||||||    
T  35692591 ggacctaaatgagcggcaaactctccctaagagttttaacgtcgttgcatgcccaatgttggattcgaac 35692522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 276
Target Start/End: Complemental strand, 46864221 - 46864125
Alignment:
Q  180 gagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaaccca 276  Q
    ||||||||| |||| || ||||||  ||| |||||| || ||   ||||||||||| |||||||||| ||||||| |||| |||| ||| |||||||    
T  46864221 gagactaatccctcgaacattgtgaaacccaaatggacggcaagttctccctaagaattttaacgctactgcatgcccaaagctggatttgaaccca 46864125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 9e-33; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 155 - 314
Target Start/End: Original strand, 31579215 - 31579374
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatg 254  Q
    |||||||||||||| || |||| |||| ||||||||||| |  |||||||||| |||||||||| |||||||||||||| ||||||||| ||| ||||||    
T  31579215 cgggtatcctccgcgcgcaactgcggaaactaattcctcgagcattgtgggacttaaatgggcggcagactctccctaaaagttttaacactgttgcatg 31579314  T
Q  255 tccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
     ||||||||| |||||||||||   ||||| ||||| |||||| || ||||| |||||||    
T  31579315 cccaaggctggattcgaacccaagaccttgattaagctagaagagacccgttacatctca 31579374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 158 - 314
Target Start/End: Complemental strand, 5394548 - 5394393
Alignment:
Q  158 gtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtcc 257  Q
    |||||||||||  | |||| ||||||||||| || | |  ||||||||||| ||||||||| ||| ||||||||||||||||||||  ||||||||| ||    
T  5394548 gtatcctccgcgtgcaactgcggagactaatcccacgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaac-atgctgcatgccc 5394450  T
Q  258 aaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
    ||||||| ||||||||||||  ||||||||||| |||||| ||  |||| |||||||    
T  5394449 aaggctggattcgaacccaggaccttggttaagctagaagagactcgttccatctca 5394393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 314
Target Start/End: Original strand, 42745102 - 42745261
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatg 254  Q
    |||||||||||||| || |||| | ||||||||| |||| |  ||||||| ||| |||| |||  ||||||||||||||||||||||||  |||||||||    
T  42745102 cgggtatcctccgcgcgcaactgctgagactaatccctcgaccattgtggaacccaaataggcagcagactctccctaagagttttaacattgctgcatg 42745201  T
Q  255 tccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
     ||||||||| |||||||||||   ||||||||||| || ||| || ||||| |||||||    
T  42745202 cccaaggctggattcgaacccaagaccttggttaagctataagagacccgttccatctca 42745261  T

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Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 212 - 314
Target Start/End: Original strand, 44732616 - 44732718
Alignment:
Q  212 atgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatc 311  Q
    ||||||| ||| |||||||||||||||||||| |||||||||| ||||||||| ||||||||||||  ||||||||||| || ||| || ||||| ||||    
T  44732616 atgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctataagagacccgttccatc 44732715  T
Q  312 tca 314  Q
    |||    
T  44732716 tca 44732718  T

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Target: chr2; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 197 - 314
Target Start/End: Original strand, 12133258 - 12133375
Alignment:
Q  197 tattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaa 296  Q
    |||||| ||||| |||||| || ||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||   ||||| ||||| |||||    
T  12133258 tattgtaggacccaaatggacggcaggctctccctaagagttttaacgttgctgcatgtccaaggctggattcgaacccatgaccttgattaagctagaa 12133357  T
Q  297 gggatccgtttcatctca 314  Q
    | ||  |||| |||||||    
T  12133358 gagactcgttccatctca 12133375  T

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Target: chr2; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 159 - 314
Target Start/End: Original strand, 18105353 - 18105507
Alignment:
Q  159 tatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtcca 258  Q
    |||||||||| || |||| || |||||||| |||| | ||||||| |||  ||||||||| ||| |||||| ||||| |||||||| || |||||| |||    
T  18105353 tatcctccgcgcgcaactgcg-agactaatccctcgagtattgtgagactcaaatgggcggcaggctctccataagaattttaacgttgttgcatgccca 18105451  T
Q  259 aggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
    |||||| ||||||||||||  ||||||||||| |||||| ||  |||| |||||||    
T  18105452 aggctggattcgaacccaggaccttggttaagctagaagagactcgttccatctca 18105507  T

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Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 274
Target Start/End: Original strand, 9438126 - 9438241
Alignment:
Q  159 tatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtcca 258  Q
    |||||||||| || ||||  ||| |||||| ||||||  ||||||||||  ||||||||| |||  ||| ||||||||||||||| |||||||||| |||    
T  9438126 tatcctccgcgcgcaactgtggaaactaatccctcaagcattgtgggacacaaatgggcggcaggttcttcctaagagttttaaccctgctgcatgccca 9438225  T
Q  259 aggctgtattcgaacc 274  Q
    |||||| |||||||||    
T  9438226 aggctggattcgaacc 9438241  T

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Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 227 - 314
Target Start/End: Original strand, 37568785 - 37568872
Alignment:
Q  227 tccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatctca 314  Q
    ||||||||||||||||| |||||||||| | ||||||| ||||||||||||  ||||||||||| ||||||  | ||||| |||||||    
T  37568785 tccctaagagttttaacactgctgcatgcctaaggctggattcgaacccaggaccttggttaagctagaagaaacccgttccatctca 37568872  T

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Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 197 - 290
Target Start/End: Complemental strand, 993866 - 993774
Alignment:
Q  197 tattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaag 290  Q
    |||||| ||||| ||||||||| ||   ||||||||||||||||| |||||||||||| |||||| || ||||||||||||  |||||||||||    
T  993866 tattgtaggacccaaatgggcggcaagttctccctaagagtttta-cgctgctgcatgcccaaggttgaattcgaacccaggaccttggttaag 993774  T

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Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 297
Target Start/End: Complemental strand, 7157598 - 7157511
Alignment:
Q  210 aaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaag 297  Q
    |||| |||| ||| ||||||||||||||||||||| ||||||||| ||||||||  ||||||||| ||   |||||||||| ||||||    
T  7157598 aaataggcggcaggctctccctaagagttttaacgttgctgcatgcccaaggctagattcgaacctaggatcttggttaagttagaag 7157511  T

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Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 199 - 269
Target Start/End: Original strand, 13153953 - 13154023
Alignment:
Q  199 ttgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattc 269  Q
    ||||||||| ||||||| | ||| ||||| |||||||||||||||| |||||| |||||||| ||||||||    
T  13153953 ttgtgggacttaaatggactacaaactcttcctaagagttttaacgttgctgcgtgtccaagactgtattc 13154023  T

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Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 276
Target Start/End: Original strand, 37179987 - 37180103
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatg 254  Q
    |||||||||||||| || || | || |||||||| |||| | |||||||||||  ||||||||| || ||||||||||||||     || ||| ||||||    
T  37179987 cgggtatcctccgcgcgcaagtgcgtagactaatccctcgagtattgtgggactcaaatgggcggcacactctccctaagag-----acactgttgcatg 37180081  T
Q  255 tccaaggctgtattcgaaccca 276  Q
    |||||| ||| |||||||||||    
T  37180082 tccaagactggattcgaaccca 37180103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 296
Target Start/End: Complemental strand, 34483572 - 34483476
Alignment:
Q  198 attgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaa 296  Q
    |||||||||| ||||||||||  | ||| || |||||||||||||||||| |||||||||||| ||| ||| ||| ||||| | ||||||||| |||||    
T  34483572 attgtgggac-taaatgggcggaaaactatctctaagagttttaacgctgttgcatgtccaagactgaatttgaa-ccagaactttggttaagctagaa 34483476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 272
Target Start/End: Original strand, 39401098 - 39401172
Alignment:
Q  198 attgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaa 272  Q
    |||||||||||||||||| ||||   |||||||||| |||||||| | | ||||||| ||||||||| |||||||    
T  39401098 attgtgggacctaaatggacgacgagctctccctaaaagttttaatgatactgcatgcccaaggctgaattcgaa 39401172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 276
Target Start/End: Original strand, 2562375 - 2562452
Alignment:
Q  199 ttgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaaccca 276  Q
    |||||||||| ||||| ||| || ||||| | |||||||| |||||||||||||||   || ||||||||||||||||    
T  2562375 ttgtgggacccaaatgagcgccaaactcttcataagagttgtaacgctgctgcatgcagaaagctgtattcgaaccca 2562452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 289
Target Start/End: Complemental strand, 17672741 - 17672652
Alignment:
Q  200 tgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaa 289  Q
    ||||||||  ||||||||  || ||||||||||||| |||||||| || |||||| |||||| || |||||||| |||  ||||||||||    
T  17672741 tgtgggactcaaatgggcagcaaactctccctaagaattttaacgttgttgcatgcccaaggttggattcgaactcaggaccttggttaa 17672652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 256
Target Start/End: Original strand, 24412914 - 24413013
Alignment:
Q  156 gggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgt 255  Q
    |||||||||||   || |||| |||||||||||||||||| |||||||||||  |||| || | ||  |||| ||| |||||||||||| ||||||||||    
T  24412914 gggtatcctcctagcggaactgcggagactaattcctcaagtattgtgggactcaaataggtggcaagctct-ccttagagttttaacgttgctgcatgt 24413012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 314
Target Start/End: Complemental strand, 33757077 - 33756973
Alignment:
Q  210 aaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttca 309  Q
    ||||| ||||||  |||| ||||||||||||||||||  || |||  |||||||| ||||||||  ||| ||||| ||||| |||||| || |||| |||    
T  33757077 aaatgagcgacaagctcttcctaagagttttaacgctattgtatgctcaaggctgaattcgaactaagaaccttgattaagctagaagagacccgtgtca 33756978  T
Q  310 tctca 314  Q
    |||||    
T  33756977 tctca 33756973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 268
Target Start/End: Complemental strand, 32113847 - 32113780
Alignment:
Q  201 gtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtatt 268  Q
    |||| ||||||||  |||| | ||||||| ||||||||||||||| |||| ||| |||||||||||||    
T  32113847 gtggaacctaaataagcgataaactctccttaagagttttaacgcggctgaatgcccaaggctgtatt 32113780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 17658573 - 17658500
Alignment:
Q  199 ttgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaaggctgtattcgaa 272  Q
    |||||||||  ||||||||  || ||||||||||||| |||||||| || |||||| ||||||||  |||||||    
T  17658573 ttgtgggactcaaatgggcagcaaactctccctaagaattttaacgttgttgcatgcccaaggctagattcgaa 17658500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 260
Target Start/End: Complemental strand, 17981652 - 17981548
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatg 254  Q
    |||||||||||||| || |||| |||||||||||  ||| |  ||||||||||| ||||  ||| ||  ||||||||||||||||||| | || ||||||    
T  17981652 cgggtatcctccgcgcgcaactgcggagactaatctctcgagcattgtgggacccaaat-tgcggcaagctctccctaagagttttaatgttgttgcatg 17981554  T
Q  255 tccaag 260  Q
     |||||    
T  17981553 cccaag 17981548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 259
Target Start/End: Complemental strand, 39314546 - 39314497
Alignment:
Q  210 aaatgggcgacagactctccctaagagttttaacgctgctgcatgtccaa 259  Q
    ||||||||| || |||||||||| |||||||||||| |||||||| ||||    
T  39314546 aaatgggcggcaaactctccctacgagttttaacgcagctgcatgcccaa 39314497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 289
Target Start/End: Complemental strand, 25988693 - 25988641
Alignment:
Q  237 ttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaa 289  Q
    |||||| ||||||| ||| ||||||||| |||||||||||||  |||||||||    
T  25988693 ttttaaagctgctgtatgcccaaggctgaattcgaacccagaatcttggttaa 25988641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 290
Target Start/End: Original strand, 38372980 - 38373113
Alignment:
Q  155 cgggtatcctccgcacgtaactccggagactaattcctcaaatattgtgggacctaaatgggcgacagactctccctaagagttttaacgctgctgcatg 254  Q
    |||||||||||||| || ||||    ||||||||||||  |  ||||||||||| |  |||||| ||  |||| ||||||||||||| ||||||||||||    
T  38372980 cgggtatcctccgcgcgcaactgtatagactaattccttgagcattgtgggaccca--tgggcggcaagctcttcctaagagttttaccgctgctgcatg 38373077  T
Q  255 tccaaggctgtattcgaacccagagccttggttaag 290  Q
       |||| || |||||||||||| |  |||||||||    
T  38373078 cataaggttggattcgaacccagggatttggttaag 38373113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 38464033 - 38463969
Alignment:
Q  232 aagagttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaa 296  Q
    ||||||||||||| || |||||| ||||||||| ||||||| | ||| | ||||||||| |||||    
T  38464033 aagagttttaacggtgttgcatgcccaaggctggattcgaatctagaactttggttaagttagaa 38463969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 32330 - 32407
Alignment:
Q  235 agttttaacgctgctgcatgtccaaggctgtattcgaacccagagccttggttaaggtagaagggatccgtttcatct 312  Q
    |||||||||||||||||||  |||||  || ||||||||||||| ||||||| ||| |||||| || ||||| |||||    
T  32330 agttttaacgctgctgcatacccaagattggattcgaacccagaaccttggtgaagctagaagagacccgttccatct 32407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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