View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14714_low_6 (Length: 317)
Name: NF14714_low_6
Description: NF14714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14714_low_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 15 - 317
Target Start/End: Complemental strand, 5160349 - 5160047
Alignment:
| Q |
15 |
aaacacttcatgaaaatacaaagaacactcacgtacaactannnnnnnnnnnnnnnnnnngtagagtaaaccattccacgaataccatcaggatcagcaa |
114 |
Q |
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| T |
5160349 |
aaacacttcatgaaaatacaaagaacactcacgtacaactatttttttcttttgttttttgtagagtaaaccattccacgaataccatcaggatcagcaa |
5160250 |
T |
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| Q |
115 |
caaaacccaaaggtcgataaaagccaagaactcttggctcagaataaagagaaatattggtaatcccttttcctacaagatccttcataagcctctccac |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
5160249 |
caaaacccaaaggtcgataaaagccaagaactcttggctcagaataaagagaaatattggtaatccctcttcctacaagatccctcataagcctctccac |
5160150 |
T |
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| Q |
215 |
aacagctttccctagaccaagcccttgaaacgaaggatcaacaacaacatcccatattatcgcattgaaaacaccatcaccagtagctcttgcaaatgca |
314 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5160149 |
aacagctttccctagcccaagcccttgaaacgaaggatcaacaacaacatcccatattatcgcattgaaaacaccatcaccagtagctcttgcaaatgca |
5160050 |
T |
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| Q |
315 |
acc |
317 |
Q |
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||| |
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| T |
5160049 |
acc |
5160047 |
T |
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