View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14714_low_8 (Length: 232)
Name: NF14714_low_8
Description: NF14714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14714_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 16859139 - 16859218
Alignment:
| Q |
137 |
gagtttaattagcgtactctgtcaatgtataattattttacacataatttatccaatgatgtgttgctacatcaattaat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16859139 |
gagtttaattagcgtactctgtcaatgtataattattttacacataatttatccaatgatgtgttgctacatcaattaat |
16859218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 25562988 - 25562947
Alignment:
| Q |
137 |
gagtttaattagcgtactctgtcaatgtataattattttaca |
178 |
Q |
| |
|
||||||||||| | ||||||||||||||| |||||||||||| |
|
|
| T |
25562988 |
gagtttaattaacatactctgtcaatgtacaattattttaca |
25562947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 18358948 - 18358907
Alignment:
| Q |
140 |
tttaattagcgtactctgtcaatgtataattattttacacat |
181 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
18358948 |
tttaattagtatactctgtcagtgtataattattttacacat |
18358907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 30017379 - 30017420
Alignment:
| Q |
137 |
gagtttaattagcgtactctgtcaatgtataattattttaca |
178 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
30017379 |
gagtttaattagtatactctgttaatgtataattattttaca |
30017420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University