View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14714_low_9 (Length: 202)
Name: NF14714_low_9
Description: NF14714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14714_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 111; Significance: 3e-56; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 64 - 186
Target Start/End: Original strand, 2294825 - 2294947
Alignment:
| Q |
64 |
caacacattgggaacttgaacagtttcacctttcatttgataggttaaattgaattcatacaaatactaatttctaattttttaatacttacaacaagta |
163 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2294825 |
caacacattgggaacttgaacagtttcacctttcatttgataggttaaattgagttcatacaaatactaatttctaattttttaatacttacaacaagta |
2294924 |
T |
|
| Q |
164 |
tcctaaagacactctttaatatt |
186 |
Q |
| |
|
||||||||| |||||||| |||| |
|
|
| T |
2294925 |
tcctaaagatactctttagtatt |
2294947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 2304667 - 2304730
Alignment:
| Q |
64 |
caacacattgggaacttgaacagtttcacctttcatttgataggttaaattgaattcatacaaa |
127 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
2304667 |
caacacattgggaacttgaacaatttcacctttcatttgataggttaaattgagttcgtacaaa |
2304730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 2310704 - 2310757
Alignment:
| Q |
133 |
atttctaattttttaatacttacaacaagtatcctaaagacactctttaatatt |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2310704 |
atttctaattttttaatacttacaacaagtatcctaaagacactctttagtatt |
2310757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University