View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14715_high_10 (Length: 325)

Name: NF14715_high_10
Description: NF14715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14715_high_10
NF14715_high_10
[»] chr2 (5 HSPs)
chr2 (1-172)||(44555504-44555676)
chr2 (1-103)||(44544862-44544964)
chr2 (251-311)||(44555759-44555819)
chr2 (251-311)||(44546144-44546204)
chr2 (124-169)||(44545014-44545059)
[»] chr1 (2 HSPs)
chr1 (1-98)||(51845888-51845985)
chr1 (260-311)||(51845835-51845886)
[»] chr4 (1 HSPs)
chr4 (263-303)||(2572368-2572408)


Alignment Details
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 44555504 - 44555676
Alignment:
Q  1 tccacttgaattccatattcttccaccattgcacgtttacaaccaattttcttatcattcagatatttttctactgcatccatgctttcatcacactgtt 100  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44555504 tccacttgaattccattttcttccaccattgcacgtttacagccaattttcttatcattcagatatttttctactgtatccatgctttcatcacactgtt 44555603  T
Q  101 cattcacaaggacaaaacatatgttaaataa-ttatataaatataattcaaccactttgtcatgtcatcatca 172  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  44555604 cattcacaaggacaaaacatatgttaattaatttatataaatataattcaaccactttgtcatgtcatcatca 44555676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 44544862 - 44544964
Alignment:
Q  1 tccacttgaattccatattcttccaccattgcacgtttacaaccaattttcttatcattcagatatttttctactgcatccatgctttcatcacactgtt 100  Q
    |||||||||||||||| ||||||||||| |||||| |||||| ||||||| ||||||||||||||||| ||||||||||| |||||| ||||||||||||    
T  44544862 tccacttgaattccattttcttccaccaatgcacgcttacaaacaatttttttatcattcagatatttctctactgcatcaatgcttccatcacactgtt 44544961  T
Q  101 cat 103  Q
    |||    
T  44544962 cat 44544964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 251 - 311
Target Start/End: Original strand, 44555759 - 44555819
Alignment:
Q  251 cttgcctgaaatgatatatgattatcctttggattaatttcgttcttccttggaatatttt 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44555759 cttgcctgaaatgatatatgattatcctttggattaatttcgttcttccttggaatatttt 44555819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 251 - 311
Target Start/End: Original strand, 44546144 - 44546204
Alignment:
Q  251 cttgcctgaaatgatatatgattatcctttggattaatttcgttcttccttggaatatttt 311  Q
    |||||||| ||||| |||||||||||||||| ||||||||| |||||||||||||| ||||    
T  44546144 cttgcctggaatgagatatgattatcctttgtattaatttccttcttccttggaatttttt 44546204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 44545014 - 44545059
Alignment:
Q  124 ttaaataattatataaatataattcaaccactttgtcatgtcatca 169  Q
    |||| |||||||||||||||||||||||||||  ||||||||||||    
T  44545014 ttaattaattatataaatataattcaaccactaggtcatgtcatca 44545059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 51845985 - 51845888
Alignment:
Q  1 tccacttgaattccatattcttccaccattgcacgtttacaaccaattttcttatcattcagatatttttctactgcatccatgctttcatcacactg 98  Q
    |||||||||||||||| ||| || ||||||||||||||  ||||||||||| |||| |||| |||||| |||||||||||||||||||||||||||||    
T  51845985 tccacttgaattccattttcctcaaccattgcacgttttaaaccaattttcatatccttcaaatatttctctactgcatccatgctttcatcacactg 51845888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 311
Target Start/End: Complemental strand, 51845886 - 51845835
Alignment:
Q  260 aatgatatatgattatcctttggattaatttcgttcttccttggaatatttt 311  Q
    ||||| ||||| |||||||||| ||||||||| |||||||||||||| ||||    
T  51845886 aatgagatatgcttatcctttgtattaatttcattcttccttggaatctttt 51845835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 2572408 - 2572368
Alignment:
Q  263 gatatatgattatcctttggattaatttcgttcttccttgg 303  Q
    ||||| ||||||||||||||||||||||| |||||||||||    
T  2572408 gatatgtgattatcctttggattaatttccttcttccttgg 2572368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University