View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14715_high_12 (Length: 307)
Name: NF14715_high_12
Description: NF14715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14715_high_12 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 952418 - 952703
Alignment:
| Q |
18 |
gaatagttaggtaaacggatatcctctgcatttggggggtctcctacgaccatggcatcggccttcatcatgttcattttaagaacaactataattctgt |
117 |
Q |
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| T |
952418 |
gaatagttaggtaaacggatgtcctctgcgtttggggggtctcctacgaccatggcatcggccttcatcatgttcattttaagaacaacgataattctgt |
952517 |
T |
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| Q |
118 |
taaaaacataaacgagatagatagatagttaataaacgcgtgtaatgtagaataaaaatgataattgtgtaaaaatagaggaagtgatgcattacttgtc |
217 |
Q |
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| T |
952518 |
taaaaacataaacgagat----agatagttaataaaggcgtgtaatgtagaataaaaatgataattgtgtaaaaatagaggaagtgatgcattacttgtc |
952613 |
T |
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| Q |
218 |
tccactgtccaaagttctgcaacaatactgcatcaaccttacaattgacccaacacggtacccttctcgaatgtatgttcttgagagcga |
307 |
Q |
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| T |
952614 |
tccactgtccaaagttctgcaacaatactgcatcaaccttacaattgacccaacacggtacccttctcgaaggtatgttcttgagagcga |
952703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 304
Target Start/End: Complemental strand, 2940604 - 2940496
Alignment:
| Q |
195 |
gaggaagtgatgcattacttgtctccactgtccaaagttctgcaacaatactgcatcaaccttacaattgacccaacacggtacccttctcgaatgtatg |
294 |
Q |
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|||| ||||||||||| |||||||||||||| |||||| |||||| || |||||||| |||| |||||| | || ||||||||| ||| ||| | | | |
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| T |
2940604 |
gagggagtgatgcatttcttgtctccactgtacaaagtagtgcaaccgtattgcatcaatctta-aattgatctaatacggtacccctcttgaaagcaag |
2940506 |
T |
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| Q |
295 |
ttcttgagag |
304 |
Q |
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| T |
2940505 |
ttcttgagag |
2940496 |
T |
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