View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14715_high_13 (Length: 264)
Name: NF14715_high_13
Description: NF14715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14715_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 952758 - 952973
Alignment:
| Q |
10 |
tttgtttcatagtccttcggttaccgggaaatttacaatatgtaaaatttgcagaagcatataaggcttctctccttttagtgtgccttctttgtgaacg |
109 |
Q |
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| T |
952758 |
tttgttacatagtccttcggttatcgggaaatttacaatatgtaaaatttgcataagcatataaggcttctctccttttagtgtgccttctttgtgaacg |
952857 |
T |
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| Q |
110 |
aagagtatgtcatggatagcattagaggtcaaattgacatctgagaaagtctgaaatcaaataacaaataagaatcaggtaattaactatatactttcat |
209 |
Q |
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| T |
952858 |
aagagtatgtcatggatagcattagaggtcaaattgacatctgagaaagtctgaaatcaaaaaacaaataagaatcaagtaattaactatatactttcat |
952957 |
T |
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| Q |
210 |
acctcgaaaaaattat |
225 |
Q |
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| T |
952958 |
acctccaaaaaattat |
952973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 120
Target Start/End: Original strand, 955889 - 955925
Alignment:
| Q |
84 |
cttttagtgtgccttctttgtgaacgaagagtatgtc |
120 |
Q |
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| T |
955889 |
cttttagtgtgccttctttgtgaacgaagagtatgtc |
955925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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