View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14715_high_17 (Length: 237)
Name: NF14715_high_17
Description: NF14715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14715_high_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 9064065 - 9063875
Alignment:
| Q |
18 |
gattatggatctaagcttattcttcgttgcgtttatcattacctagtcaatctttataaccatcctttcaataggttgtagaactacaatcaaacttgcc |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9064065 |
gattatggatctaagctgattcttcgttgtctttatcattacctagtcaatcattataaccattctttcaataggttgtagaactacaatcaaacttgcc |
9063966 |
T |
|
| Q |
118 |
atgtgatgttatttccactgaattttatatgttcttcaataccgatttgtacctgaacatatctatgggaagacattttgaacaaatggtt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9063965 |
atgtgatgttatttccactgaattttatatgttcttcaataccgatttgtacctgaacatatctatgggaagacattttgatcaaatggtt |
9063875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 148
Target Start/End: Original strand, 9289111 - 9289232
Alignment:
| Q |
33 |
cttattcttcgttgcgtttatcattacctagtcaatctttataaccatcctttcaataggttgtagaac------tacaatcaaacttgccatgtgatgt |
126 |
Q |
| |
|
||||| |||| ||| |||| ||||||| |||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||| |||| ||| |
|
|
| T |
9289111 |
cttatccttcattgtgtttttcattacgtagtcaatatttgtaaccatcctttcaataggttgtagaaccatgagtacaatcaaacttgccctgtgttgt |
9289210 |
T |
|
| Q |
127 |
tatttccactgaattttatatg |
148 |
Q |
| |
|
|||||||| ||| ||| ||||| |
|
|
| T |
9289211 |
tatttccattgagtttgatatg |
9289232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 9313695 - 9313760
Alignment:
| Q |
33 |
cttattcttcgttgcgtttatcattacctagtcaatctttataaccatcctttcaataggttgtag |
98 |
Q |
| |
|
||||| |||||||| |||| |||||||| |||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
9313695 |
cttatccttcgttgtgtttttcattacccagtcgatctttgtaaccatcctttcaataggttgtag |
9313760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 9070871 - 9070819
Alignment:
| Q |
104 |
caatcaaacttgccatgtgatgttatttccactgaattttatatgttcttcaa |
156 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
9070871 |
caatcaaacttgccctgtgatgttatttccattgaatttgatatgttcttcaa |
9070819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 9076090 - 9076035
Alignment:
| Q |
33 |
cttattcttcgttgcgtttatcattacctagtcaatctttataaccatcctttcaa |
88 |
Q |
| |
|
||||| |||||||| ||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9076090 |
cttatccttcgttgtatttttcattacctagtcaatctttataaccattctttcaa |
9076035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University