View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14715_high_2 (Length: 540)
Name: NF14715_high_2
Description: NF14715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14715_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Original strand, 34688053 - 34688487
Alignment:
| Q |
18 |
agaggctcgttgttattcatacaaattcactttcataccaaacatggaccaaactgtttgaagaatatct--tagttacnnnnnnnnnnnnnnnnnnntt |
115 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | || |
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| T |
34688053 |
agaggctcgttgtgattcatacaaattcactttcataccaaacatggaccaaactgtttgaagaatatctcatagttccaaaagaaagaaagaaaaagtt |
34688152 |
T |
|
| Q |
116 |
aaggaggtactgacagagtagtagggtgaggcacaaacaacgttgattggttgagatgcatgatttggggagagagcatagagtgcagcaagaaaaagtt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34688153 |
aaggaggtactgacagagtagtagggtgaggcacaaacaacgttgattggttgagatgcatgatttggggagagagcatagagtgcagcaagaaaaagtt |
34688252 |
T |
|
| Q |
216 |
gagaggaacctgtccctacaacaatgtgacgtccttctgtgactgcattcccgaccactctgtgcaacctcactacctcctttgcaaactctgcctcaag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34688253 |
gagaggaacctgtccctacaacaatgtgacgtccttctgtgactgcattcccgaccactctgtgcaacctcactacctcctttgcaaactctgcctcaag |
34688352 |
T |
|
| Q |
316 |
aaaccaacatatgttcgacacatccgaaaaatagctcatggattgccatcctggtattatgatcgtgctcttgtcacctgtttgtctccaaaatctttca |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34688353 |
aaaccaacatatgttcgacacatccgaaaaatagctcatggattgccatcctggtattatgatcgtgctcttgtcacctgtttgtctccaaaatctttca |
34688452 |
T |
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| Q |
416 |
tatactgtcggatccccactgcatatacatttaat |
450 |
Q |
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| T |
34688453 |
tatactgtcggatccccactgcatatacatataat |
34688487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 444 - 533
Target Start/End: Original strand, 34688527 - 34688616
Alignment:
| Q |
444 |
atttaattgattgaagtcaattgaccacaatttaaaaaatagatcattattatgttccataccaaacaagctttttatttactagttcat |
533 |
Q |
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| T |
34688527 |
atttaattgattcaagtcaattgaccacaatttaaaaaatagatcattattatgttccataccaaacaagctttttatttactagttcat |
34688616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 185 - 390
Target Start/End: Original strand, 43614400 - 43614605
Alignment:
| Q |
185 |
gagagagcatagagtgcagcaagaaaaagttgagaggaacctgtccctacaacaatgtgacgtccttctgtgactgcattcccgaccactctgtgcaacc |
284 |
Q |
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||||||||||| || |||||||||| | ||||| |||||||| || ||||||| ||| || |||| ||| |||||||| || ||||| | || |||| |
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| T |
43614400 |
gagagagcataaagagcagcaagaattaactgagatgaacctgttccaacaacaacgtgtcgaccttgtgttactgcatttccaaccacattatgtaacc |
43614499 |
T |
|
| Q |
285 |
tcactacctcctttgcaaactctgcctcaagaaaccaacatatgttcgacacatccgaaaaatagctcatggattgccatcctggtattatgatcgtgct |
384 |
Q |
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||||||| ||||||| ||| |||| ||||||||||||||| ||| | | ||| |||||||| ||||| |||||||||||||||||||| || ||| | |
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| T |
43614500 |
tcactacttcctttgaaaattctggctcaagaaaccaacaaatgcttgttggatcagaaaaataactcatagattgccatcctggtattattattgtggt |
43614599 |
T |
|
| Q |
385 |
cttgtc |
390 |
Q |
| |
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|||||| |
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|
| T |
43614600 |
cttgtc |
43614605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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