View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14715_low_10 (Length: 346)
Name: NF14715_low_10
Description: NF14715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14715_low_10 |
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| [»] scaffold0793 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 89 - 336
Target Start/End: Original strand, 714774 - 715030
Alignment:
| Q |
89 |
actagacaagtactcatccaatcctataaagtttctagccaatgcatgaaagttgtctgtagacta----------agtgacaatttacaacttataatt |
178 |
Q |
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| T |
714774 |
actagactagtactcatacaatcctataaagtttctagccaatgcatgaaagttgtctgtagactatattattttgagtgacaatttacaacttataatt |
714873 |
T |
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| Q |
179 |
ttagtcactcaaaatcacgtcttagtttctaaagagattctactcatcattttatatttacatcttgtatatcnnnnnnnccaaattcctacaccatcta |
278 |
Q |
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| T |
714874 |
ttagtcactcaaaatcacgtcttagtttctaaagagattctactcatcattttatatttacatcttgtatatc-aaaaaaccaaattcctacaccatcta |
714972 |
T |
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| Q |
279 |
tgatcactagattatcatacacgcagcaaaatttgcgtctaattacaataaccctgat |
336 |
Q |
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| T |
714973 |
tgatcactagattatcatacacgcagcaaaatttgcgtctaattacaataaccctgat |
715030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 124 - 341
Target Start/End: Original strand, 752134 - 752360
Alignment:
| Q |
124 |
tagccaatgcatgaaagttgtctgtagacta----------agtgacaatttacaacttataattttagtcactcaaaatcacgtcttagtttctaaaga |
213 |
Q |
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| T |
752134 |
tagccaatgcatgaaagttgtctgtagactatattattttgagtgacaatttacaacttataattttagtcactcaaaatcacgtcttagtttctaaaga |
752233 |
T |
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| Q |
214 |
gattctactcatcattttatatttacatcttgtatatcnnnnnnnccaaattcctacaccatctatgatcactagattatcatacacgcagcaaaatttg |
313 |
Q |
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| T |
752234 |
gattctactcatcattttatatttacatcttgtatatc-aaaaaaccaaattcctacaccatctatgatcactagattatcatacacgcagcaaaatttg |
752332 |
T |
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| Q |
314 |
cgtctaattacaataaccctgatgatgt |
341 |
Q |
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| T |
752333 |
cgtctaattacaataaccctgatcatgt |
752360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 714657 - 714740
Alignment:
| Q |
1 |
tttgtcttttgcttatgtaatttgatcaattgtcttgggcaatttgaagctaatcatgtgttgttgtactgagttgtaaatcat |
84 |
Q |
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| T |
714657 |
tttgtccttagcttatgtaatttgatcaattgtcttgggtaatttgaagctaatcatgtgttgatgtattgagttgtaaatcat |
714740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 731026 - 730953
Alignment:
| Q |
268 |
tacaccatctatgatcactagattatcatacacgcagcaaaatttgcgtctaattacaataaccctgatgatgt |
341 |
Q |
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| T |
731026 |
tacaccatctatgatcattagattatcatacaccatgcaaaatttgcgtctaattacaataaccctgatcatgt |
730953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0793 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: scaffold0793
Description:
Target: scaffold0793; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 101 - 336
Target Start/End: Original strand, 4062 - 4306
Alignment:
| Q |
101 |
ctcatccaatcctataaagtttctagccaatgcatgaaagttgtctgtagacta----------agtgacaatttacaacttataattttagtcactcaa |
190 |
Q |
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| T |
4062 |
ctcatccaatcctctcaagtttctagccaatgcatgaaagttgtctgtagactatattattttgagtgacaatttacaacttataattttagtcactcaa |
4161 |
T |
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| Q |
191 |
aatcacgtcttagtttctaaagagattctactcatcattttatatttacatcttgtatatcnnnnnnnccaaattcctacaccatctatgatcactagat |
290 |
Q |
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| T |
4162 |
aatcacgtcttagtttctaaagagattctactcatcattttatatttacatcttgtatatc-aaaaaaccaaattcctacaccatctatgatcactagat |
4260 |
T |
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| Q |
291 |
tatcatacacgcagcaaaatttgcgtctaattacaataaccctgat |
336 |
Q |
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| T |
4261 |
tatcatacacgcagcaaaatttgcgtctaattacaataaccctgat |
4306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0793; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 2932 - 2992
Alignment:
| Q |
281 |
atcactagattatcatacacgcagcaaaatttgcgtctaattacaataaccctgatgatgt |
341 |
Q |
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| T |
2932 |
atcactagattatcatacaccatgcaaaatttgcgtctaattacaataaccctgatcatgt |
2992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 3765333 - 3765416
Alignment:
| Q |
1 |
tttgtcttttgcttatgtaatttgatcaattgtcttgggcaatttgaagctaatcatgtgttgttgtactgagttgtaaatcat |
84 |
Q |
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| T |
3765333 |
tttgtccttagcttatgtaatttgttctattgtcttgggtagtttgaagctaatcatgtgttgatgtattgagttgtaaatcat |
3765416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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