View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14715_low_11 (Length: 336)
Name: NF14715_low_11
Description: NF14715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14715_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 12 - 320
Target Start/End: Original strand, 15547247 - 15547555
Alignment:
| Q |
12 |
tgaaaccggcggtagttaactgccgaaggacattacggtcttttgcatgtgtgtttcagccaaataacaattttctaacctcatgactcaatgagaatca |
111 |
Q |
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| T |
15547247 |
tgaaaccgacagtagttaactgccgaagaacattaaagtcttttacatgtgtgtttcagccaaataacaattttctaacctcatgactcaatgagaatca |
15547346 |
T |
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| Q |
112 |
cttagaatgtggttcattcatcttctataccttgcaaagatgtaatgttcaaatcacatatttagctcttcaaattccaaatcacatatatgaatcacac |
211 |
Q |
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| T |
15547347 |
cttagaatgtggttcattcatcttctataccttgcaaagatgtaatgttcaaatcacatatttggctcttcaaattccaaatcacatatatgaatcacac |
15547446 |
T |
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| Q |
212 |
actgattatacgatatcttacaaaagagattattaaagaatgaaactgttttagaacatagaaaatggacccaatgatttctcagattttattatatata |
311 |
Q |
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| T |
15547447 |
actgattatactatatcttacaaaagagattattaaagaatgaaactgttttagaacatagaaaatggacccaatgatttctcagattttattatatata |
15547546 |
T |
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| Q |
312 |
cacactttg |
320 |
Q |
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| T |
15547547 |
cacactttg |
15547555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 305
Target Start/End: Original strand, 15615879 - 15615983
Alignment:
| Q |
201 |
atgaatcacacactgattatacgatatcttacaaaagagattattaaagaatgaaactgttttagaacatagaaaatggacccaatgatttctcagattt |
300 |
Q |
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| T |
15615879 |
atgaatcacacactggttctacaatcactcacaaaagagaggattatagaatgaagttggtttaggacatagaaaatggaccaaatgatttctcaaattt |
15615978 |
T |
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| Q |
301 |
tatta |
305 |
Q |
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||||| |
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| T |
15615979 |
tatta |
15615983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 231 - 305
Target Start/End: Original strand, 15635789 - 15635863
Alignment:
| Q |
231 |
acaaaagagattattaaagaatgaaactgttttagaacatagaaaatggacccaatgatttctcagattttatta |
305 |
Q |
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| T |
15635789 |
acaaaagagaggattatagaatgaagttggtttaggacatagaaaatggaccaaatgatttctcaaattttatta |
15635863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 17747158 - 17747099
Alignment:
| Q |
12 |
tgaaaccggcggtagttaactgccgaaggacattacggtcttttgcatgtgtgtttcagcc |
72 |
Q |
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| T |
17747158 |
tgaaaccggcggcagttaactgccgaggggtattac-gtcttttacatgtgtgtttcagcc |
17747099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 55278308 - 55278254
Alignment:
| Q |
17 |
ccggcggtagttaactgccgaaggacattacggtcttttgcatgtgtgtttcagc |
71 |
Q |
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| T |
55278308 |
ccggcggcagttaactgccgaggggcattatggtcttttatatgtgtgtttcagc |
55278254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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