View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14715_low_17 (Length: 250)
Name: NF14715_low_17
Description: NF14715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14715_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 12 - 239
Target Start/End: Complemental strand, 4711512 - 4711285
Alignment:
| Q |
12 |
agcataggagggatcaaagttttggtatgaagttgggtaaaaatgaaggctaataaaaacaggggtgttagttatgctagaaaatgagtatgtgaaattt |
111 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4711512 |
agcattggagggatcaaagttttggtatgaagttgggtaaaaatgaaggctaataaaaacaggggtgttagtgatgctagaaaatgagtatgtgaaattt |
4711413 |
T |
|
| Q |
112 |
gagagagaggcacgtgcagttgtgaatggaatttgggtatttgaaagggaaataggtgatgtgttaagagatgggtttttggtttttggttcaatgaatg |
211 |
Q |
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|
||||||||| ||| || ||||||| |||||| | | |||| ||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||| | |
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| T |
4711412 |
gagagagagatacgcgcggttgtgagtggaatatcgatattggaaagggaattaggtgatgatttaagagatgggtttgtggtttttggttcaatgaagg |
4711313 |
T |
|
| Q |
212 |
taaagagatctgcgttatcagtattatc |
239 |
Q |
| |
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||||||||| || ||||||| ||||||| |
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| T |
4711312 |
taaagagatttgagttatcaatattatc |
4711285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 12 - 239
Target Start/End: Complemental strand, 4845440 - 4845213
Alignment:
| Q |
12 |
agcataggagggatcaaagttttggtatgaagttgggtaaaaatgaaggctaataaaaacaggggtgttagttatgctagaaaatgagtatgtgaaattt |
111 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
4845440 |
agcattggagggatcaaagttctggtatgaagttgggtaaaaatgaaggcgaataaaaacaggggaactaggaatgctagaaaatgagtatgtgaaattt |
4845341 |
T |
|
| Q |
112 |
gagagagaggcacgtgcagttgtgaatggaatttgggtatttgaaagggaaataggtgatgtgttaagagatgggtttttggtttttggttcaatgaatg |
211 |
Q |
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|||| |||| | | || |||||||||||||||||| |||| ||||||||| |||| |||| |||| |||||| ||| ||||||||||||||||||| | |
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| T |
4845340 |
gagaaagagatatgcgcggttgtgaatggaatttggatattggaaagggaattaggagatgatttaaaagatggatttgtggtttttggttcaatgaagg |
4845241 |
T |
|
| Q |
212 |
taaagagatctgcgttatcagtattatc |
239 |
Q |
| |
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||||||||| || ||||||| ||||||| |
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| T |
4845240 |
taaagagatttgagttatcaatattatc |
4845213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 25 - 220
Target Start/End: Complemental strand, 4815679 - 4815481
Alignment:
| Q |
25 |
tcaaagttttggtatgaagttgggtaaaaatgaaggctaataaaaacaggggtgttagttatgct---agaaaatgagtatgtgaaatttgagagagagg |
121 |
Q |
| |
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||||| ||||| ||||||||||||||||||||||||| || ||||| || || |||||| ||| | |||||||||||||||||||||||||||||||| |
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| T |
4815679 |
tcaaaattttgatatgaagttgggtaaaaatgaaggcgaagaaaaatagtggagttagtgatgatgttagaaaatgagtatgtgaaatttgagagagagg |
4815580 |
T |
|
| Q |
122 |
cacgtgcagttgtgaatggaatttgggtatttgaaagggaaataggtgatgtgttaagagatgggtttttggtttttggttcaatgaatgtaaagagat |
220 |
Q |
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||||| | |||||||||||||||||||||||||| |||||| ||||| ||| ||||||||||||||| | |||||||||||||||| | |||||||| |
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| T |
4815579 |
cacgtccggttgtgaatggaatttgggtatttgagagggaattaggttttgttttaagagatgggtttgtattttttggttcaatgaaggaaaagagat |
4815481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 25 - 220
Target Start/End: Complemental strand, 4783250 - 4783052
Alignment:
| Q |
25 |
tcaaagttttggtatgaagttgggtaaaaatgaaggctaataaaaacaggggtgttagttatgct---agaaaatgagtatgtgaaatttgagagagagg |
121 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||| || ||||| || || |||||| ||| | |||||||||||||||||||||||||||||||| |
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| T |
4783250 |
tcaaaattttgatatgaagttgggtaaaaatgaaggcgaagaaaaatagtggagttagtgatgatgttagaaaatgagtatgtgaaatttgagagagagg |
4783151 |
T |
|
| Q |
122 |
cacgtgcagttgtgaatggaatttgggtatttgaaagggaaataggtgatgtgttaagagatgggtttttggtttttggttcaatgaatgtaaagagat |
220 |
Q |
| |
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||||| | |||||||||||||||||| ||||||| |||||| ||||| ||| ||||||||||||||| | |||||||||||||||| | |||||||| |
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| T |
4783150 |
cacgtacggttgtgaatggaatttggatatttgagagggaattaggttttgttttaagagatgggtttgtattttttggttcaatgaaggaaaagagat |
4783052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 4654170 - 4654368
Alignment:
| Q |
19 |
gagggatcaaagttttggtatgaagttgggtaaaaatgaaggctaataaaaacaggggtgttagttatgctagaaaatgagtatgtgaaatttgagagag |
118 |
Q |
| |
|
||||| ||||| ||||| || ||||| |||||||||||||||| |||||||||||| |||| ||| ||||||||||||||||||||| |||||||| |
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|
| T |
4654170 |
gagggttcaaatttttgatacgaagtagggtaaaaatgaaggcggttaaaaacaggggaagtagtgatgttagaaaatgagtatgtgaaatatgagagag |
4654269 |
T |
|
| Q |
119 |
aggcacgtgcagttgtgaatggaatttgggtatttgaaagggaaataggtgatgtgttaagagatgggtttttggtttttggttcaatgaatgtaaaga |
217 |
Q |
| |
|
|| |||||| ||||||||||||||||| |||||||| |||||| || ||| ||| ||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
4654270 |
agatacgtgcggttgtgaatggaatttgagtatttgagagggaactacgtggtgttgtaagagatgggttcgtggtttttggttcaatgaaagtaaaga |
4654368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 25 - 239
Target Start/End: Complemental strand, 4696593 - 4696379
Alignment:
| Q |
25 |
tcaaagttttggtatgaagttgggtaaaaatgaaggctaataaaaacaggggtgttagttatgctagaaaatgagtatgtgaaatttgagagagaggcac |
124 |
Q |
| |
|
||||||||| |||| ||||| |||||||||||||||| || ||||||||||| |||| ||||||| ||| |||||||||||||||||||||||| ||| |
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| T |
4696593 |
tcaaagtttcggtacgaagtcgggtaaaaatgaaggcgaagaaaaacaggggaagtagtgatgctaggaaaagagtatgtgaaatttgagagagagacac |
4696494 |
T |
|
| Q |
125 |
gtgcagttgtgaatggaatttgggtatttgaaagggaaataggtgatgtgttaagagatgggtttttggtttttggttcaatgaatgtaaagagatctgc |
224 |
Q |
| |
|
|||| |||||||||||||||||| ||||||| |||| |||||| | | ||||||||| |||| |||||||||||||| |||| | |||||| | || |
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|
| T |
4696493 |
gtgcggttgtgaatggaatttggatatttgagagggtgttaggtggtattgtaagagatgtgtttgtggtttttggttcattgaaggaaaagagttttgt |
4696394 |
T |
|
| Q |
225 |
gttatcagtattatc |
239 |
Q |
| |
|
||||||| ||||||| |
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|
| T |
4696393 |
gttatcattattatc |
4696379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 4673371 - 4673596
Alignment:
| Q |
13 |
gcataggagggatcaaagttttggtatgaagttgggtaaaaatgaaggctaataaaaacaggggtgttagttatgctagaaaatgagtatgtgaaatttg |
112 |
Q |
| |
|
|||| ||||||||||||| ||| || || |||||||||||||||||| || |||||||| || ||||| |||||||||||||||||||||||||||| |
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|
| T |
4673371 |
gcattggagggatcaaagcttttagataaatttgggtaaaaatgaaggcgaagaaaaacagtggaattagtgatgctagaaaatgagtatgtgaaatttg |
4673470 |
T |
|
| Q |
113 |
agagagaggcacgtgcagttgtgaatggaatttgggtatttgaaagggaaataggtgatgtgttaagagatgggtttttggtttttggttcaatgaatgt |
212 |
Q |
| |
|
||||||| ||||||| |||| |||||| |||| ||||||| |||||| ||||| ||| |||||||||||| | ||||||||||||||||||| || |
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|
| T |
4673471 |
agagagaaacacgtgcgtgtgtgtatggaacttggatatttgagagggaattaggttgtgttgtaagagatgggtatgtggtttttggttcaatgaaagt |
4673570 |
T |
|
| Q |
213 |
aaagagatctgcgttatcagtattat |
238 |
Q |
| |
|
|||||||| || ||||| | |||||| |
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|
| T |
4673571 |
aaagagatttgtgttattaatattat |
4673596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 25 - 239
Target Start/End: Original strand, 4864605 - 4864819
Alignment:
| Q |
25 |
tcaaagttttggtatgaagttgggtaaaaatgaaggctaataaaaacaggggtgttagttatgctagaaaatgagtatgtgaaatttgagagagaggcac |
124 |
Q |
| |
|
||||||||||| || || ||||||||||||||||| | || ||||||||| | |||| ||| |||||||||| ||||||||| ||||||||||| || |
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|
| T |
4864605 |
tcaaagttttgataagatgttgggtaaaaatgaagacgaacaaaaacaggcgaactagtgatggtagaaaatgaatatgtgaaacttgagagagagatac |
4864704 |
T |
|
| Q |
125 |
gtgcagttgtgaatggaatttgggtatttgaaagggaaataggtgatgtgttaagagatgggtttttggtttttggttcaatgaatgtaaagagatctgc |
224 |
Q |
| |
|
| || |||||| ||||||||| | | |||||| |||| |||||||||| ||||||||||||||| |||||||| |||||||||| |||||||||| | |
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|
| T |
4864705 |
gcgcggttgtgtatggaatttcgatgtttgaagcggaactaggtgatgttttaagagatgggtttgtggttttttgttcaatgaaagtaaagagattttt |
4864804 |
T |
|
| Q |
225 |
gttatcagtattatc |
239 |
Q |
| |
|
||||||| ||||||| |
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|
| T |
4864805 |
gttatcaatattatc |
4864819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 25 - 220
Target Start/End: Original strand, 4637534 - 4637729
Alignment:
| Q |
25 |
tcaaagttttggtatgaagttgggtaaaaatgaaggctaataaaaacaggggtgttagttatgctagaaaatgagtatgtgaaatttgagagagaggcac |
124 |
Q |
| |
|
||||||||||| || || || |||||||||||||| | || |||||||| || ||||| ||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
4637534 |
tcaaagttttgataagatgtagggtaaaaatgaagacgaagaaaaacagtggaattagtgatgctagaaaatgagtatgtgaaatttgagagagaaacac |
4637633 |
T |
|
| Q |
125 |
gtgcagttgtgaatggaatttgggtatttgaaagggaaataggtgatgtgttaagagatgggtttttggtttttggttcaatgaatgtaaagagat |
220 |
Q |
| |
|
|||| |||| |||||| |||| ||||||| |||||| ||| | | |||| |||||||||| ||||||||||||||||||| |||||||||| |
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|
| T |
4637634 |
gtgcgtgtgtgtatggaacttggatatttgagagggaattagcttgtacattaaaagatgggtttgtggtttttggttcaatgaaagtaaagagat |
4637729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 239
Target Start/End: Original strand, 4644396 - 4644586
Alignment:
| Q |
46 |
gggtaaaaatgaaggctaataaaaacaggggtgttagttatgctagaaaatgagtatgtgaaatttgagagagaggcacgtgcagttgtgaatggaattt |
145 |
Q |
| |
|
|||||||||| ||||| || ||||||||||| ||| |||||||||||||||||||| |||||||||| |||| ||||||| |||| |||||| | |
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| T |
4644396 |
gggtaaaaataaaggcgaagaaaaacaggggaaacagtgatgctagaaaatgagtatgtaaaatttgagaaagagacacgtgcgtgtgtgtatggaactg |
4644495 |
T |
|
| Q |
146 |
gggtatttgaaagggaaataggtgatgtgttaagagatgggtttttggtttttggttcaatgaatgtaaagagatctgcgttatcagtattatc |
239 |
Q |
| |
|
| ||||| |||| || ||||||| ||| ||||||| || ||||||||||||||||||| |||||||| | || ||||||| ||||||| |
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|
| T |
4644496 |
tgaaatttg---gggatttaagtgatgttttaggagatggattagtggtttttggttcaatgaaagtaaagagttttgtgttatcattattatc |
4644586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 4663358 - 4663504
Alignment:
| Q |
13 |
gcataggagggatcaaagttttggtatgaagttgggtaaaaatgaaggctaataaaaacaggggtgttagttatgctagaaaatgagtatgtgaaatttg |
112 |
Q |
| |
|
|||| |||||| |||||||||| || || |||| |||||||||||||| || |||||||||| ||| ||| ||| |||||||||||||||||||| |
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| T |
4663358 |
gcattggagggttcaaagtttttataagatgttgagtaaaaatgaaggcgaagaaaaacagggcaactagggatggtaggaaatgagtatgtgaaatttg |
4663457 |
T |
|
| Q |
113 |
agagagaggcacgtgcagttgtgaatggaatttgggtatttgaaagg |
159 |
Q |
| |
|
|||| ||| |||||| ||| ||| ||||||| || ||||||||||| |
|
|
| T |
4663458 |
agagcgagatacgtgcggttttgagtggaattgggatatttgaaagg |
4663504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 4663526 - 4663590
Alignment:
| Q |
175 |
ttaagagatgggtttttggtttttggttcaatgaatgtaaagagatctgcgttatcagtattatc |
239 |
Q |
| |
|
||||||||||| ||||| |||||||| |||| ||| | |||||| |||| ||||||| ||||||| |
|
|
| T |
4663526 |
ttaagagatggattttttgtttttggctcaaggaaagaaaagagttctgtgttatcattattatc |
4663590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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