View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14715_low_18 (Length: 240)
Name: NF14715_low_18
Description: NF14715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14715_low_18 |
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| [»] chr6 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 240
Target Start/End: Original strand, 26463750 - 26463977
Alignment:
| Q |
12 |
agtatcaactagcaacacatgaaaacttgaattacatttcttagcagacagaaaccatgttgtaatggtttgataacatgtgttaattcaagagacattg |
111 |
Q |
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| T |
26463750 |
agtatcaactagcaacacatgaaaacttgaattacatttcttagcagacagaaaccatgttgtaatggtttgataacatgtgttaattcaagagacattg |
26463849 |
T |
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| Q |
112 |
acatccttgttgtaaaattgtagtttgtataacccaactccttccgtttctgcaatgattgtgaaccatgacaagctaagaacaaacattaaaagctata |
211 |
Q |
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| T |
26463850 |
acatccttgttgt-aaattgtagtttgtataacccaactccttccctttctgcaatgattgtgaaccatgacaagctaagaacaaacattaaaagctata |
26463948 |
T |
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| Q |
212 |
atcttggaggtatgggttgtagtgctggt |
240 |
Q |
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| T |
26463949 |
atcttggaggtatgggttgtagtgctggt |
26463977 |
T |
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Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 86 - 240
Target Start/End: Complemental strand, 49041969 - 49041816
Alignment:
| Q |
86 |
aacatgtgttaattcaagagacattgacatccttgttgtaaaattgtagtttgtataacccaactccttccgtttctgcaatgattgtgaaccatgacaa |
185 |
Q |
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| T |
49041969 |
aacaggtgttaatccaagagacattgacattcttgttgtaaa-ttgtagtttgtttaacccaactccttcactttctgcaatgattgtgaaccattacaa |
49041871 |
T |
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| Q |
186 |
gctaagaacaaacattaaaagctataatcttggaggtatgggttgtagtgctggt |
240 |
Q |
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| T |
49041870 |
gcttagaacaaacattaaaagctataatctcggaggtatgggttgtagtgctggt |
49041816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 31197650 - 31197720
Alignment:
| Q |
170 |
ttgtgaaccatgacaagctaagaacaaacattaaaagctataatcttggaggtatgggttgtagtgctggt |
240 |
Q |
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| T |
31197650 |
ttgtgaatcattacaagctaagaacaaacattaaaagctataatcttggaggtatgggttgtagtgctggt |
31197720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 239
Target Start/End: Original strand, 34051978 - 34052090
Alignment:
| Q |
127 |
aattgtagtttgtataacccaactccttccgtttctgcaatgattgtgaaccatgacaagctaagaacaaacattaaaagctataatcttggaggtatgg |
226 |
Q |
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| T |
34051978 |
aattgtagtttgtttaatcctacaccttctctttctgctatgattgtgaatcattataagttaagagggaatgttcaaagttataatcttggtggtatgg |
34052077 |
T |
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| Q |
227 |
gttgtagtgctgg |
239 |
Q |
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| T |
34052078 |
gttgtagtgctgg |
34052090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 240
Target Start/End: Original strand, 15237149 - 15237262
Alignment:
| Q |
127 |
aattgtagtttgtataacccaactccttccgtttctgcaatgattgtgaaccatgacaagctaagaacaaacattaaaagctataatcttggaggtatgg |
226 |
Q |
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| T |
15237149 |
aattgtagtttgtttaatccaacaccatctctttctgccatgattgtgaatcattataagttgagaggaaatatcttgagttataatcttggtggtatgg |
15237248 |
T |
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| Q |
227 |
gttgtagtgctggt |
240 |
Q |
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| T |
15237249 |
gttgtagtgctggt |
15237262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 48062840 - 48062917
Alignment:
| Q |
12 |
agtatcaactagcaacacatgaaaacttgaat---tacatttcttagcagacagaaaccatgttgtaatggtttgata |
86 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| | ||||||||||| |
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| T |
48062840 |
agtatcaactagcaacacatgaaaacttgaatctgtacatttcttagcagacagaagccatgtcatcatggtttgata |
48062917 |
T |
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