View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14715_low_2 (Length: 680)

Name: NF14715_low_2
Description: NF14715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14715_low_2
NF14715_low_2
[»] chr6 (27 HSPs)
chr6 (1-679)||(5353725-5354403)
chr6 (206-298)||(5097178-5097270)
chr6 (206-295)||(5350828-5350917)
chr6 (15-295)||(5397256-5397536)
chr6 (206-295)||(5102166-5102255)
chr6 (206-295)||(5137218-5137307)
chr6 (206-295)||(5157150-5157239)
chr6 (206-295)||(5426350-5426439)
chr6 (59-295)||(5434538-5434774)
chr6 (213-292)||(5448028-5448107)
chr6 (206-295)||(5371041-5371130)
chr6 (206-295)||(5127939-5128028)
chr6 (109-297)||(5243405-5243593)
chr6 (1-145)||(5256973-5257117)
chr6 (222-300)||(5066184-5066262)
chr6 (225-294)||(5181474-5181543)
chr6 (60-293)||(5345212-5345445)
chr6 (13-145)||(5097012-5097144)
chr6 (231-295)||(5256889-5256950)
chr6 (15-103)||(5284073-5284161)
chr6 (231-277)||(5283961-5284007)
chr6 (13-118)||(5066366-5066471)
chr6 (59-128)||(5073570-5073639)
chr6 (490-550)||(5136868-5136929)
chr6 (59-124)||(5177092-5177157)
chr6 (59-124)||(5278919-5278984)
chr6 (225-294)||(5383776-5383845)
[»] chr5 (1 HSPs)
chr5 (114-295)||(8878005-8878186)
[»] chr3 (8 HSPs)
chr3 (3-145)||(47986546-47986688)
chr3 (3-145)||(47995833-47995975)
chr3 (3-145)||(48005120-48005262)
chr3 (3-145)||(48014405-48014547)
chr3 (199-241)||(47986477-47986519)
chr3 (199-241)||(47995764-47995806)
chr3 (199-241)||(48005051-48005093)
chr3 (199-241)||(48014336-48014378)
[»] chr7 (1 HSPs)
chr7 (214-294)||(36213382-36213462)
[»] scaffold0294 (1 HSPs)
scaffold0294 (214-294)||(8478-8558)
[»] chr4 (2 HSPs)
chr4 (225-279)||(4320139-4320193)
chr4 (225-269)||(6651541-6651585)


Alignment Details
Target: chr6 (Bit Score: 643; Significance: 0; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 1 - 679
Target Start/End: Complemental strand, 5354403 - 5353725
Alignment:
Q  1 ctttttctgaccaccttccaagacttcgaagtcttcgggtggattgcaattccgtagatcaactttctctagatgcaaaaacaattttgaatgccctata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5354403 ctttttctgaccaccttccaagacttcgaagtcttcgggtggattgcaattccgtagatcaactttctctagatgcaaaaacaattttgaatgccctata 5354304  T
Q  101 tgccactgtttctaaggaatttgaatcaactgcaactacatcacatgcacctgatatgaagacttttacattaattcaacgatgcagcgaagtgcatttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  5354303 tgccactgtttctaaggaatttgaatcaactgcaactacatcacatgcacctgatatgaagacttttacattaattcaacgatgcagtgaagtgcatgtt 5354204  T
Q  201 tcaggatcacaacattccttcaagtctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggtttgtctgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5354203 tcaggatcacaacattccttcaagtctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggtttgtctgt 5354104  T
Q  301 ctgtatgcctatcacctcatacatttgaattctttttgtgtaattctgtaacaacacaagtaagtgtgcggaagaatgatagtcttaacatatttgttag 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  5354103 ctgtatgcctatcacctcatacatttgaattctttttgtgtaattctgtaacaacacaagtaagtgtgcggaagaatgataggtttaacatatttgttag 5354004  T
Q  401 caatgacagtttacatgacacatgcgtaagcatgcggattctctcttagttttgcatacttttacagaatttttactgaatagctaatctatataattga 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  5354003 caatgacagtttacatgacacatgcgtaagcatgcggattctctcttagttttgcatacttttacataatttttactgaatagctaatctatgtaattga 5353904  T
Q  501 aaagcttattttttataatcaaatatttctattaaaccttaacagatgcacaagtagtgccactgtcaagtgcagaaataacataatggctgggttggga 600  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5353903 aaagcttattttttataatcaaatttttctattaaaccttcacagatgcacaagtagtgccactgtcaagtgcagaaataacataatggctgggttggga 5353804  T
Q  601 ggttagactagaaaaaagacattcattgaaacagcatcttggttagtaactggtcatgatcttatctctgatcctacac 679  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5353803 ggttagactagaaaaaagacattcattgaaacagcatcttggttagtaactggtcatgatcttatctctgatactacac 5353725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 206 - 298
Target Start/End: Original strand, 5097178 - 5097270
Alignment:
Q  206 atcacaacattccttcaagtctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggtttgtct 298  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||| | |||||||||||    
T  5097178 atcagaacattccttcaagtctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattgtacaggtttgtct 5097270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 206 - 295
Target Start/End: Original strand, 5350828 - 5350917
Alignment:
Q  206 atcacaacattccttcaagtctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggtttg 295  Q
    |||| |||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||| ||||||||    
T  5350828 atcaaaacattccttgaagtctcttttaattcaaattggaatgaattgccaagccactaatattctgaaagagataattttacaggtttg 5350917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 15 - 295
Target Start/End: Original strand, 5397256 - 5397536
Alignment:
Q  15 cttccaagacttcgaagtcttcgggtggattgcaattccgtagatcaactttctctagatgcaaaaacaattttgaatgccctatatgccactgtttcta 114  Q
    |||||||| |||||||||||| | |||||||||||||| | ||||||||||||||| |||||||||| ||||||| |||| |||| ||| ||   |||||    
T  5397256 cttccaaggcttcgaagtctttgcgtggattgcaattctgaagatcaactttctcttgatgcaaaaataattttggatgctctatgtgctacaaattcta 5397355  T
Q  115 aggaatttgaatcaactgcaactacatcacatgcacctgatatgaagacttttacattaattcaacgatg-cagcgaagtgcatttttcaggatcacaac 213  Q
    | ||||| |||||||||  |||||||||||| | | |  ||||||  |||| || | |||| |||  ||| || |  | ||    || |||||||| |||    
T  5397356 aagaattggaatcaactaaaactacatcacaagaatccaatatgactacttctaaactaatccaa-tatgacaacccaatgtccgttccaggatcaaaac 5397454  T
Q  214 attccttcaagtctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggtttg 295  Q
    |||||   ||||||||||||||||||||||||| |||||| |||||  | |||||||||||||||| |||||| ||||||||    
T  5397455 attccccgaagtctcttttaattcaaatgggaacgaattgtcaagttgccaatattctgaaagagataattttacaggtttg 5397536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 206 - 295
Target Start/End: Complemental strand, 5102255 - 5102166
Alignment:
Q  206 atcacaacattccttcaagtctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggtttg 295  Q
    |||| |||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||| | |||||| ||||||||    
T  5102255 atcaaaacattccttgaagtctcttttaattcaaattggaatgaattgccaagccactaatattctgaaagatataattttacaggtttg 5102166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 206 - 295
Target Start/End: Complemental strand, 5137307 - 5137218
Alignment:
Q  206 atcacaacattccttcaagtctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggtttg 295  Q
    |||| |||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||| | |||||| ||||||||    
T  5137307 atcaaaacattccttgaagtctcttttaattcaaattggaatgaattgccaagccactaatattctgaaagatataattttacaggtttg 5137218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 206 - 295
Target Start/End: Complemental strand, 5157239 - 5157150
Alignment:
Q  206 atcacaacattccttcaagtctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggtttg 295  Q
    |||| |||||||||  |||||||||||||||||||| |||||||||||||||| |||||||||||||||||| | |||||| ||||||||    
T  5157239 atcaaaacattcctcgaagtctcttttaattcaaattggaatgaattgccaagccactaatattctgaaagatataattttacaggtttg 5157150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 206 - 295
Target Start/End: Original strand, 5426350 - 5426439
Alignment:
Q  206 atcacaacattccttcaagtctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggtttg 295  Q
    |||| |||||||||| || ||||||||||||||||| |||||||||||||||| | || ||||||||||||||| |||||| ||||||||    
T  5426350 atcaaaacattccttaaaatctcttttaattcaaattggaatgaattgccaagcctctgatattctgaaagagataattttacaggtttg 5426439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 59 - 295
Target Start/End: Original strand, 5434538 - 5434774
Alignment:
Q  59 tcaactttctctagatgcaaaaacaattttgaatgccctatatgccactgtttctaaggaatttgaatcaactgcaactacatcacatgcacctgatatg 158  Q
    ||||||||||  ||||||||| | ||||||| ||||| || |||||||    ||||| ||||  | | | ||| ||||||||||||| | | |  |||||    
T  5434538 tcaactttctgaagatgcaaagataattttggatgccttacatgccacaaactctaaagaatccgtaccgactacaactacatcacaagtatcaaatatg 5434637  T
Q  159 aagacttttacattaattcaacgatgcagcgaagtgcatttttcaggatcacaacattccttcaagtctcttttaattcaaatgggaatgaattgccaag 258  Q
    |  |||| ||||||  ||||| | ||||| ||||||||  ||| ||||||| ||||||||||||| |||||||||||||||||| ||||||||||| ||     
T  5434638 actacttctacattggttcaaagctgcagtgaagtgcacgttttaggatcaaaacattccttcaactctcttttaattcaaatgagaatgaattgcaaac 5434737  T
Q  259 tcactaatattctgaaagagaaaattttgcaggtttg 295  Q
    |||| || |||||  ||||||  ||||| ||||||||    
T  5434738 tcaccaacattctcgaagagatcattttacaggtttg 5434774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 5448028 - 5448107
Alignment:
Q  213 cattccttcaagtctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggt 292  Q
    |||| ||| |||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||| |||||| |||||    
T  5448028 catttcttgaagtctcttttaattcaaattggaatgaattgcgaagtcactgatattctgaaagagataattttacaggt 5448107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 206 - 295
Target Start/End: Original strand, 5371041 - 5371130
Alignment:
Q  206 atcacaacattccttcaagtctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggtttg 295  Q
    |||| |||||||||  | |||||||||||||||||| ||||||||||||| | | ||||||||||||||||||| |||||| ||||||||    
T  5371041 atcaaaacattcctcaacgtctcttttaattcaaattggaatgaattgccgaataactaatattctgaaagagataattttacaggtttg 5371130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 206 - 295
Target Start/End: Complemental strand, 5128028 - 5127939
Alignment:
Q  206 atcacaacattccttcaagtctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggtttg 295  Q
    |||| |||||||||  ||||| || ||||||||||| |||| ||||||||||||||||||||||||||||| ||  ||||| ||||||||    
T  5128028 atcaaaacattcctcgaagtcgctattaattcaaattggaaagaattgccaagtcactaatattctgaaagggattattttacaggtttg 5127939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 109 - 297
Target Start/End: Complemental strand, 5243593 - 5243405
Alignment:
Q  109 tttctaaggaatttgaatcaactgcaactacatcacatgcacctgatatgaagacttttacattaattcaacgatgcagcgaagtgcatttttcaggatc 208  Q
    ||||||||||| | ||||| ||| || |||| ||||| ||| |  ||||||| |||| | ||||||||||||| ||||   || ||||  ||||  ||||    
T  5243593 tttctaaggaaatggaatcgacttcagctacttcacaagcatcaaatatgaaaacttctgcattaattcaacgttgcaatcaattgcaagtttccagatc 5243494  T
Q  209 acaacattccttcaagtctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggtttgtc 297  Q
    | || ||| ||| |||||| || |||| ||||||||||||||||||||||| || |||| ||| ||||| || ||||| ||||||||||    
T  5243493 agaagattacttaaagtctgttctaatacaaatgggaatgaattgccaagtaaccaataatctaaaagaaaacattttacaggtttgtc 5243405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 5257117 - 5256973
Alignment:
Q  1 ctttttctgaccaccttccaagacttcgaagtcttcgggtggattgcaattccgtagatcaactttctctagatgcaaaaacaattttgaatgccctata 100  Q
    |||||||  |||| |||||||| |||  ||||||| |||||||||||| ||| | ||||||||||||| | ||| ||| |||||||||||||||  | ||    
T  5257117 ctttttcgaaccaacttccaaggcttaaaagtctttgggtggattgcatttctgaagatcaactttctattgattcaacaacaattttgaatgctttgta 5257018  T
Q  101 tgccactgtttctaaggaatttgaatcaactgcaactacatcaca 145  Q
    ||| |   |||||| ||||||||||||| |||| | |||||||||    
T  5257017 tgctagaatttctatggaatttgaatcagctgctaatacatcaca 5256973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 222 - 300
Target Start/End: Complemental strand, 5066262 - 5066184
Alignment:
Q  222 aagtctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggtttgtctgt 300  Q
    |||||| || |||| |||||||| ||||||||||||||||| |||| ||||||||| || || || |||||||||||||    
T  5066262 aagtctgttctaatacaaatgggtatgaattgccaagtcaccaataatctgaaagaaaacatgttacaggtttgtctgt 5066184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 225 - 294
Target Start/End: Complemental strand, 5181543 - 5181474
Alignment:
Q  225 tctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggttt 294  Q
    ||||| || |||||||| |||||||||||||||||||| |||||||||| ||| || ||||| |||||||    
T  5181543 tctctgtttattcaaataggaatgaattgccaagtcaccaatattctgagagataacattttacaggttt 5181474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 60 - 293
Target Start/End: Original strand, 5345212 - 5345445
Alignment:
Q  60 caactttctctagatgcaaaaacaattttgaatgccctatatgccactgtttctaaggaatttgaatcaactgcaactacatcacatgcacctgatatga 159  Q
    |||||||||  ||||||| |||  |||||| ||||  |||| |||||  ||||||||||| | ||||| | | || |||| ||||| ||| | |||||||    
T  5345212 caactttctgaagatgcacaaatcattttggatgctttatacgccacattttctaaggaaatggaatcgatttcagctacttcacaagcatcagatatga 5345311  T
Q  160 agacttttacattaattcaacgatgcagcgaagtgcatttttcaggatcacaacattccttcaagtctcttttaattcaaatgggaatgaattgccaagt 259  Q
    | |||| | ||||||||||||| ||||   || ||||   |||  ||||| || ||| ||| |||||| || |||| |||||||||||||||| ||||||    
T  5345312 aaacttctgcattaattcaacgctgcattcaattgcacggttccagatcagaagattacttaaagtctgttctaatacaaatgggaatgaatttccaagt 5345411  T
Q  260 cactaatattctgaaagagaaaattttgcaggtt 293  Q
     || |||| ||| ||||| || ||||| ||||||    
T  5345412 aaccaataatctaaaagaaaacattttacaggtt 5345445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 5097012 - 5097144
Alignment:
Q  13 accttccaagacttcgaagtcttcgggtggattgcaattccgtagatcaactttctctagatgcaaaaacaattttgaatgccctatatgccactgtttc 112  Q
    |||||||||| |||||||||||| ||||||| ||||  || | |  |||||||||||  |||||   || ||||||| ||||| |||||||||| | ||     
T  5097012 accttccaagtcttcgaagtctttgggtggagtgcagctcagaacttcaactttctcatgatgctgcaataattttggatgccttatatgccacagatta 5097111  T
Q  113 taaggaatttgaatcaactgcaactacatcaca 145  Q
    |||||  |||||||||| ||||| |||||||||    
T  5097112 taaggggtttgaatcaattgcaattacatcaca 5097144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 5256950 - 5256889
Alignment:
Q  231 ttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggtttg 295  Q
    ||||||||||||||||| |||||||| ||||| |||||||| ||||||   ||||||||||||||    
T  5256950 ttaattcaaatgggaataaattgccatgtcaccaatattctcaaagag---attttgcaggtttg 5256889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 5284161 - 5284073
Alignment:
Q  15 cttccaagacttcgaagtcttcgggtggattgcaattccgtagatcaactttctctagatgcaaaaacaattttgaatgccctatatgc 103  Q
    |||||| | |||| ||||||| ||||||||||||| |||| ||||||||||||||| ||| ||| ||  |||||| ||||  |||||||    
T  5284161 cttccatggcttcaaagtctttgggtggattgcaactccgaagatcaactttctcttgattcaacaatgattttggatgctttatatgc 5284073  T

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Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 231 - 277
Target Start/End: Complemental strand, 5284007 - 5283961
Alignment:
Q  231 ttaattcaaatgggaatgaattgccaagtcactaatattctgaaaga 277  Q
    |||||||||||||||||||||| |||||||||  ||||||| |||||    
T  5284007 ttaattcaaatgggaatgaatttccaagtcaccgatattctcaaaga 5283961  T

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Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 118
Target Start/End: Complemental strand, 5066471 - 5066366
Alignment:
Q  13 accttccaagacttcgaagtcttcgggtggattgcaattccgtagatcaactttctctagatgcaaaaacaattttgaatgccctatatgccactgtttc 112  Q
    |||||||||| |||||||||||| ||||||| |||| ||| | | |||||||||||   ||||||| || ||| ||| ||||  |||| || ||| ||||    
T  5066471 accttccaagtcttcgaagtctttgggtggagtgcagttcagaacatcaactttctaatgatgcaacaataatattggatgctttatacgctactctttc 5066372  T
Q  113 taagga 118  Q
    ||||||    
T  5066371 taagga 5066366  T

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Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 5073639 - 5073570
Alignment:
Q  59 tcaactttctctagatgcaaaaacaattttgaatgccctatatgccactgtttctaaggaatttgaatca 128  Q
    ||||||||||| ||||||| ||| ||||||| ||||| ||||||||||   |||||| ||||| ||||||    
T  5073639 tcaactttctcaagatgcagaaagaattttggatgccttatatgccacaaattctaaagaattcgaatca 5073570  T

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Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 550
Target Start/End: Complemental strand, 5136929 - 5136868
Alignment:
Q  490 tatataattgaaaagcttatt-ttttataatcaaatatttctattaaaccttaacagatgca 550  Q
    ||||||||||||| ||||||| |||||||| ||| | ||| |||||||||| ||||||||||    
T  5136929 tatataattgaaatgcttatttttttataagcaattgtttttattaaacctcaacagatgca 5136868  T

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Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 5177092 - 5177157
Alignment:
Q  59 tcaactttctctagatgcaaaaacaattttgaatgccctatatgccactgtttctaaggaatttga 124  Q
    |||||||||| ||||||||||||  |||||| ||||  ||||||||||  ||||||||||| ||||    
T  5177092 tcaactttctgtagatgcaaaaatcattttggatgctttatatgccacaatttctaaggaaattga 5177157  T

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Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 5278919 - 5278984
Alignment:
Q  59 tcaactttctctagatgcaaaaacaattttgaatgccctatatgccactgtttctaaggaatttga 124  Q
    |||||||||| ||||||||||||  |||||| ||||  ||||||||||  ||||||||||| ||||    
T  5278919 tcaactttctgtagatgcaaaaatcattttggatgctttatatgccacaatttctaaggaaattga 5278984  T

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Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 5383776 - 5383845
Alignment:
Q  225 tctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggttt 294  Q
    |||||||| |||||||||||||||||||| ||| |  | ||||||||||||||  |||| || |||||||    
T  5383776 tctcttttcattcaaatgggaatgaattgtcaaattgcaaatattctgaaagatcaaatcttacaggttt 5383845  T

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Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 114 - 295
Target Start/End: Original strand, 8878005 - 8878186
Alignment:
Q  114 aaggaatttgaatcaactgcaactacatcacatgcacctgatatgaagacttttacattaattcaacgatgcagcgaagtgcatttttcaggatcacaac 213  Q
    |||||||| |||||| |||| ||||||||||| | | |  |||| || |||| | |||||||||||   |||||  |||||||| ||||||| ||| ||     
T  8878005 aaggaattggaatcagctgctactacatcacaagtatcaaatataaaaacttctgcattaattcaattctgcagtcaagtgcatgtttcaggttcaaaaa 8878104  T
Q  214 attccttcaagtctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggtttg 295  Q
     |||| | |||||||| || |||||||||||||||||||||||| | ||||||| |||||||||||||||||| ||||||||    
T  8878105 gttccctgaagtctctatttattcaaatgggaatgaattgccaattaactaatactctgaaagagaaaattttacaggtttg 8878186  T

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Target: chr3 (Bit Score: 51; Significance: 7e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 47986688 - 47986546
Alignment:
Q  3 ttttctgaccaccttccaagacttcgaagtcttcgggtggattgcaattccgtagatcaactttctctagatgcaaaaacaattttgaatgccctatatg 102  Q
    |||||| ||||||||| ||| |||||||||||| ||||||||||||| || | |  |||||||||||| ||||||||||  |||||| ||||  ||  ||    
T  47986688 ttttctaaccaccttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgcaaaaaatattttggatgcattaattg 47986589  T
Q  103 ccactgtttctaaggaatttgaatcaactgcaactacatcaca 145  Q
    |||| |||| |||||| || ||||||| |||||| ||||||||    
T  47986588 ccacagtttttaaggatttggaatcaattgcaacaacatcaca 47986546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 47995975 - 47995833
Alignment:
Q  3 ttttctgaccaccttccaagacttcgaagtcttcgggtggattgcaattccgtagatcaactttctctagatgcaaaaacaattttgaatgccctatatg 102  Q
    |||||| ||||||||| ||| |||||||||||| ||||||||||||| || | |  |||||||||||| ||||||||||  |||||| ||||  ||  ||    
T  47995975 ttttctaaccaccttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgcaaaaaatattttggatgcattaattg 47995876  T
Q  103 ccactgtttctaaggaatttgaatcaactgcaactacatcaca 145  Q
    |||| |||| |||||| || ||||||| |||||| ||||||||    
T  47995875 ccacagtttttaaggatttggaatcaattgcaacaacatcaca 47995833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 48005262 - 48005120
Alignment:
Q  3 ttttctgaccaccttccaagacttcgaagtcttcgggtggattgcaattccgtagatcaactttctctagatgcaaaaacaattttgaatgccctatatg 102  Q
    |||||| ||||||||| ||| |||||||||||| ||||||||||||| || | |  |||||||||||| ||||||||||  |||||| ||||  ||  ||    
T  48005262 ttttctaaccaccttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgcaaaaaatattttggatgcattaattg 48005163  T
Q  103 ccactgtttctaaggaatttgaatcaactgcaactacatcaca 145  Q
    |||| |||| |||||| || ||||||| |||||| ||||||||    
T  48005162 ccacagtttttaaggatttggaatcaattgcaacaacatcaca 48005120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 48014547 - 48014405
Alignment:
Q  3 ttttctgaccaccttccaagacttcgaagtcttcgggtggattgcaattccgtagatcaactttctctagatgcaaaaacaattttgaatgccctatatg 102  Q
    |||||| ||||||||| ||| |||||||||||| ||||||||||||| || | |  |||||||||||| ||||||||||  |||||| ||||  ||  ||    
T  48014547 ttttctaaccaccttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgcaaaaaatattttggatgcattaattg 48014448  T
Q  103 ccactgtttctaaggaatttgaatcaactgcaactacatcaca 145  Q
    |||| |||| |||||| || ||||||| |||||| ||||||||    
T  48014447 ccacagtttttaaggatttggaatcaattgcaacaacatcaca 48014405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 47986519 - 47986477
Alignment:
Q  199 tttcaggatcacaacattccttcaagtctcttttaattcaaat 241  Q
    ||||||||||| || |||||||||| |||||||||||||||||    
T  47986519 tttcaggatcaaaatattccttcaaatctcttttaattcaaat 47986477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 47995806 - 47995764
Alignment:
Q  199 tttcaggatcacaacattccttcaagtctcttttaattcaaat 241  Q
    ||||||||||| || |||||||||| |||||||||||||||||    
T  47995806 tttcaggatcaaaatattccttcaaatctcttttaattcaaat 47995764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 48005093 - 48005051
Alignment:
Q  199 tttcaggatcacaacattccttcaagtctcttttaattcaaat 241  Q
    ||||||||||| || |||||||||| |||||||||||||||||    
T  48005093 tttcaggatcaaaatattccttcaaatctcttttaattcaaat 48005051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 48014378 - 48014336
Alignment:
Q  199 tttcaggatcacaacattccttcaagtctcttttaattcaaat 241  Q
    ||||||||||| || |||||||||| |||||||||||||||||    
T  48014378 tttcaggatcaaaatattccttcaaatctcttttaattcaaat 48014336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 36213462 - 36213382
Alignment:
Q  214 attccttcaagtctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggttt 294  Q
    ||||||| || ||| |||| |||||||||||||||||||||||| |  | |||||| |||||||||||||| | |||||||    
T  36213462 attccttgaaatcttttttcattcaaatgggaatgaattgccaactttccaatattttgaaagagaaaattgtacaggttt 36213382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 8558 - 8478
Alignment:
Q  214 attccttcaagtctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggttt 294  Q
    |||||| ||| |||||||| |||| ||||||||||||||| |||||  | ||||||||||||| |  |||||| |||||||    
T  8558 attcctccaaatctcttttcattccaatgggaatgaattgtcaagttgcaaatattctgaaagggctaattttacaggttt 8478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 225 - 279
Target Start/End: Complemental strand, 4320193 - 4320139
Alignment:
Q  225 tctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagaga 279  Q
    ||||||||| |||||||||||||||| | || | |||| ||||||||||||||||    
T  4320193 tctcttttatttcaaatgggaatgaactccctaatcaccaatattctgaaagaga 4320139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 225 - 269
Target Start/End: Original strand, 6651541 - 6651585
Alignment:
Q  225 tctcttttaattcaaatgggaatgaattgccaagtcactaatatt 269  Q
    ||||| |||||||||||||||| ||| ||||||||| ||||||||    
T  6651541 tctctcttaattcaaatgggaacgaaatgccaagtctctaatatt 6651585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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