View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14715_low_21 (Length: 236)
Name: NF14715_low_21
Description: NF14715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14715_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 8 - 215
Target Start/End: Complemental strand, 19116797 - 19116588
Alignment:
| Q |
8 |
atgtcgaagaatatagtgaaaacttaagtctccagcattcctccaccctgatttgttaacttctgttgtaatgttatatcgtaagcagagacggattcat |
107 |
Q |
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| T |
19116797 |
atgtcaaagaatatagtgaaaacttaagtgtctagcattcctccaccctgatttgttaacttctgttgtaatgttataccgtaagcagagacggattcat |
19116698 |
T |
|
| Q |
108 |
aaattttaataagtagggttaaagatttcataatgaaaaattcaccttaaaaatacaagttgttatt--ttttatcaatgtaataattacaacatttttt |
205 |
Q |
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| T |
19116697 |
aaattttaataagtagggttaaagatttcataatgaaaaattcaccttaaaaatacaagttgttattttttttatcaatgttataattacaacatttttt |
19116598 |
T |
|
| Q |
206 |
atatacaaag |
215 |
Q |
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|||||||||| |
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| T |
19116597 |
atatacaaag |
19116588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 38575364 - 38575314
Alignment:
| Q |
156 |
aaaaatacaagttgttattttttatcaatgtaataattacaacattttttat |
207 |
Q |
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| T |
38575364 |
aaaaatacaagtggttattttt-atcaatgtaataatcacaacattttttat |
38575314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 1738586 - 1738630
Alignment:
| Q |
174 |
tttttatcaatgtaataattacaacattttttatatacaaagtta |
218 |
Q |
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| T |
1738586 |
tttttatcaatctaataattacaacactttttttatacaaagtta |
1738630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 4446694 - 4446757
Alignment:
| Q |
156 |
aaaaatacaagttgttattttttatcaatgtaataattacaaca-ttttttatatacaaagttat |
219 |
Q |
| |
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|||||||||| |||||||||| ||||||| |||||||||| ||| |||||| ||||||||||||| |
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|
| T |
4446694 |
aaaaatacaaattgttatttt-tatcaatctaataattacgacagttttttttatacaaagttat |
4446757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 205
Target Start/End: Complemental strand, 27001445 - 27001343
Alignment:
| Q |
100 |
ggattcataaattttaataagtagggttaaagatttcataat-gaaaaattcaccttaaaaatacaagttgttattttttatcaatgtaataattacaac |
198 |
Q |
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|||| ||| ||||||| ||||| ||| || |||||||||| |||||||||| ||||||||||||||| || ||||||||||| |||||||||| |
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| T |
27001445 |
ggatccatgaattttagtaagtgtggtcaatgatttcataaaagaaaaattcattttaaaaatacaagttatt----tttatcaatgtgctaattacaac |
27001350 |
T |
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| Q |
199 |
atttttt |
205 |
Q |
| |
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||||||| |
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|
| T |
27001349 |
atttttt |
27001343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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