View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14715_low_23 (Length: 218)
Name: NF14715_low_23
Description: NF14715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14715_low_23 |
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| [»] chr2 (2 HSPs) |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 85 - 218
Target Start/End: Original strand, 12995348 - 12995482
Alignment:
| Q |
85 |
cttaacgttattttttgtggtgttataa-gtaactagacaaaacaaaaaggaaaaagtagaggaaattaaggtccaagttatactaatgactatgaatat |
183 |
Q |
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| T |
12995348 |
cttaacgttattttttgtggtgttataaagtaactagacaaaacaaaaaggaaaaagcagaggaaattaaggtccaagttatactaatgactatgaatat |
12995447 |
T |
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| Q |
184 |
gtaaacaataaacatcatcaaaatacttaatacct |
218 |
Q |
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| T |
12995448 |
gtaaacaataaacatcatcaaaatacttaatacct |
12995482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 12994893 - 12994974
Alignment:
| Q |
11 |
tacaaaaagtaaattggaattcattcaaacgatagatgaaaaactgcatctaattgaaaatatactatacttatcttaacgt |
92 |
Q |
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| T |
12994893 |
tacaaaaagtaaattggaattcattcaaacgatagatgaaaaagtgcatctaattgaaaatatactatacttatcttaacgt |
12994974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 22916896 - 22916846
Alignment:
| Q |
168 |
taatgactatgaatatgtaaacaataaacatcatcaaaatacttaatacct |
218 |
Q |
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| T |
22916896 |
taattactatgaacatgtaaacaataaacatcatcaacacacttaatacct |
22916846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 22884168 - 22884117
Alignment:
| Q |
168 |
taatgactatgaatatgtaaacaataaacatcatcaaa-atacttaatacct |
218 |
Q |
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| T |
22884168 |
taattactatgaacatgtaaacaataaacatcatcaaacacacttaatacct |
22884117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 22902066 - 22902015
Alignment:
| Q |
168 |
taatgactatgaatatgtaaacaataaacatcatcaaa-atacttaatacct |
218 |
Q |
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|||| |||||||| |||||||||||||||||||||||| | ||||||||||| |
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| T |
22902066 |
taattactatgaacatgtaaacaataaacatcatcaaacacacttaatacct |
22902015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 30989855 - 30989893
Alignment:
| Q |
163 |
tatactaatgactatgaatatgtaaacaataaacatcat |
201 |
Q |
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| T |
30989855 |
tatactaattactatgaacatgtaaacaataaacatcat |
30989893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 30989894 - 30989947
Alignment:
| Q |
165 |
tactaatgactatgaatatgtaaacaataaacatcatcaaaatacttaatacct |
218 |
Q |
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||||||| ||||| || ||||||| ||||||||||||||| | ||||||||||| |
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| T |
30989894 |
tactaattactataaacatgtaaataataaacatcatcaacacacttaatacct |
30989947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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