View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14715_low_4 (Length: 480)
Name: NF14715_low_4
Description: NF14715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14715_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Original strand, 43585010 - 43585467
Alignment:
| Q |
1 |
tgctgcaaagcattccatagttttgaattgtagttttcatcatgtccaagaatataaaaaggtagggagttgaattttgtcttcaacattatcctcttgt |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43585010 |
tgctgcaaagcaatccatagttttgaattgtagttttcatcatgtccaaagaaataaaaaggtagggagttgaattttgtcttcaacattatcctcttgt |
43585109 |
T |
|
| Q |
101 |
gagaatactggggctgatcttcatccccacattttctttaatcatatnnnnnnntatcgcaccctctcaaatagtgagccacagtttgtatcctttgttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
43585110 |
gagaatactggggctgatcttcatccccacattttctttaatcatataaaaaaatatc------tctcaaatagtgagccacagtttgtatcctttgttt |
43585203 |
T |
|
| Q |
201 |
gattcctcaactcaatcaacacagaaaaaatagtagtagacagttgttcatccttagggttttccttctctcttcaaatatgtaccctagctagattact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43585204 |
gattcctcaactcaatcaacacagaaaaaatagtagtagacagttgttcatccttagggttttccttctctcttcaaatatgtaccctagctagattact |
43585303 |
T |
|
| Q |
301 |
atcttcaaccaccaacactcattcttcagacaatacagtgcaaatagtatacccctctcatcctcttccaagactgtagcactgaattgacaacaacttg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43585304 |
atcttcaaccaccaacactcattcttcagacaatacagtgcaaatagtatacccctctcatcctcttccaagactgtagcactgaattgacaacaacttg |
43585403 |
T |
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| Q |
401 |
catgcattacaccagaattaatcattgtgaaatatcaattattttatccgggtaatcatatgag |
464 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43585404 |
catgcattacaccagaattaatcattgtgaaatatcaattattttatccgggtaatcatatgag |
43585467 |
T |
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