View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14715_low_6 (Length: 456)
Name: NF14715_low_6
Description: NF14715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14715_low_6 |
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| [»] scaffold0874 (1 HSPs) |
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Alignment Details
Target: scaffold0874 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: scaffold0874
Description:
Target: scaffold0874; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 84 - 421
Target Start/End: Original strand, 1 - 338
Alignment:
| Q |
84 |
ccatgatggggagcgttcttctcatttgagtactaggaagaccgagttgaatgttcgtggtggattgagaaagaacgggagtaggtattcatttggggat |
183 |
Q |
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| T |
1 |
ccatgatggggagcgttcttctcatttgagtactaggaagaccgagttgaatgttcgtggtggattgagaaagaacgggagtaggtattcattaggggat |
100 |
T |
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| Q |
184 |
tttgatcggccagataatgaagatccttattcttctttgaattctaggaggaatggatcaaatattgatgctagaatgaggaagcacgggaatggaagga |
283 |
Q |
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| T |
101 |
gttgatcggccagataatgaagatccttattcttctttgaattctgggaggaatggatcaaatattgatgctagaatgaggaagcacgggaatggaagga |
200 |
T |
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| Q |
284 |
agtttattccaaagggtgtagatgggtcggatgatgcagagcgttcttctccttcacatgcgaggaatggagcgagttttgatggcaatttcgggaataa |
383 |
Q |
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| T |
201 |
agtttattccaaagggtgtagatgggtcggatgatgcagagcgttcttctccttcacatgcgaggaatggagcgagttttgatggcaatttcgggaataa |
300 |
T |
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| Q |
384 |
agggagtgcaaggagggttttatccaatgatggtgatg |
421 |
Q |
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| T |
301 |
agggagtgcaaggagggatttatccaacgatggtgatg |
338 |
T |
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