View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14715_low_7 (Length: 421)

Name: NF14715_low_7
Description: NF14715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14715_low_7
NF14715_low_7
[»] chr4 (3 HSPs)
chr4 (1-406)||(2886709-2887115)
chr4 (57-405)||(2897262-2897610)
chr4 (124-404)||(2877066-2877346)
[»] chr2 (4 HSPs)
chr2 (124-404)||(44223185-44223465)
chr2 (124-404)||(44234007-44234287)
chr2 (124-401)||(44211026-44211303)
chr2 (186-293)||(43457689-43457796)
[»] chr7 (11 HSPs)
chr7 (194-401)||(39589339-39589546)
chr7 (169-401)||(39547511-39547743)
chr7 (169-401)||(39564290-39564522)
chr7 (266-401)||(39338675-39338810)
chr7 (235-401)||(39353487-39353653)
chr7 (266-401)||(39366028-39366163)
chr7 (169-404)||(39575098-39575333)
chr7 (266-401)||(39538053-39538188)
chr7 (253-401)||(42133047-42133195)
chr7 (351-406)||(42171835-42171890)
chr7 (266-404)||(1084844-1084984)
[»] chr1 (3 HSPs)
chr1 (168-401)||(2160881-2161114)
chr1 (168-269)||(2149030-2149131)
chr1 (251-302)||(41687770-41687821)
[»] chr8 (1 HSPs)
chr8 (194-393)||(4501169-4501368)
[»] chr3 (1 HSPs)
chr3 (313-401)||(49773210-49773298)


Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 2886709 - 2887115
Alignment:
Q  1 gatgttttatattct-tcgacatgccacaggtaagtgagattataaaagtttattacaatttaagatttggttttcaaacaatgtttttagttaactttg 99  Q
    |||||| |||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2886709 gatgttgtatattctgttgacatgccacaggtaagtgagattataaaagttttttacaatttaagatttggttttcaaacaatgtttttagttaactttg 2886808  T
Q  100 gaccttaactcttgagattctaattggcaggaaatgaaggttcaaggggtagtagaggatagattagtacttttgaagggtgttagtggtgcagttaggc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2886809 gaccttaactcttgagattctaattggcaggaaatgaaggttcaaggggtactagaggatagattagtacttttgaagggtgttagtggtgcatttaggc 2886908  T
Q  200 ctggtgttctcactgccttaatgggagttagtggagctggtaaaactactttaatggatgttttggctggtaggaaaactggtggttatattgacgggag 299  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2886909 ctggtgttctcacagccttaatgggagttagtggagctggtaaaactactttaatggatgttttggctggtaggaaaactggtggttatattgacgggag 2887008  T
Q  300 cataaaaatttctgggtaccctaaaaaacaagaaacgtttgctcgaatctctggttattgtgagcagaatgatatccattctcctcatgttactgtctat 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2887009 cataaaaatttctgggtaccctaaaaaacaagaaacgtttgctcgaatctctggttattgtgagcagaatgatatccattctcctcatgttactgtctat 2887108  T
Q  400 gagtcac 406  Q
    |||||||    
T  2887109 gagtcac 2887115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 57 - 405
Target Start/End: Complemental strand, 2897610 - 2897262
Alignment:
Q  57 aatttaagatttggttttcaaacaatgtttttagttaactttggaccttaactcttgagattctaattggcaggaaatgaaggttcaaggggtagtagag 156  Q
    |||| |||||||| |||||||||||||| || ||||||||||| ||||||||| |||||  ||||| || |||||||||||||||||||| |||||||||    
T  2897610 aattgaagatttgattttcaaacaatgtgttcagttaactttgaaccttaactattgagtatctaaatgacaggaaatgaaggttcaaggtgtagtagag 2897511  T
Q  157 gatagattagtacttttgaagggtgttagtggtgcagttaggcctggtgttctcactgccttaatgggagttagtggagctggtaaaactactttaatgg 256  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  2897510 gatagattagtacttttgaagggtgttagtggtgcatttaggcctggtgttctcacagcattaatgggagttagtggagctggtaaaactactttaatgg 2897411  T
Q  257 atgttttggctggtaggaaaactggtggttatattgacgggagcataaaaatttctgggtaccctaaaaaacaagaaacgtttgctcgaatctctggtta 356  Q
    |||||||||||||||| ||||| ||||||||||| || || | |||||||||||| || |||| ||||| ||||||||||||||||||||||||||||||    
T  2897410 atgttttggctggtagaaaaaccggtggttatatcgatggcaccataaaaatttcaggctaccttaaaagacaagaaacgtttgctcgaatctctggtta 2897311  T
Q  357 ttgtgagcagaatgatatccattctcctcatgttactgtctatgagtca 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2897310 ttgtgagcagaatgatatccattctcctcatgttactgtctatgagtca 2897262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 124 - 404
Target Start/End: Original strand, 2877066 - 2877346
Alignment:
Q  124 tggcaggaaatgaaggttcaaggggtagtagaggatagattagtacttttgaagggtgttagtggtgcagttaggcctggtgttctcactgccttaatgg 223  Q
    |||||||||||||| | |||||| ||  ||||||||||  |||| ||||||||||| |||||||||||| |||| |||||||||||||| || || ||||    
T  2877066 tggcaggaaatgaaagatcaaggtgtgatagaggataggctagtgcttttgaagggagttagtggtgcatttagacctggtgttctcacagctttgatgg 2877165  T
Q  224 gagttagtggagctggtaaaactactttaatggatgttttggctggtaggaaaactggtggttatattgacgggagcataaaaatttctgggtaccctaa 323  Q
    | |||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||    
T  2877166 gtgttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaactagtggttatattgatgggagcataaaaatttctggttaccctaa 2877265  T
Q  324 aaaacaagaaacgtttgctcgaatctctggttattgtgagcagaatgatatccattctcctcatgttactgtctatgagtc 404  Q
    ||| |||||||| |||||| |||||||||| ||||||||||||||||||||||| || ||||| |||||||||||||||||    
T  2877266 aaagcaagaaacatttgctagaatctctggctattgtgagcagaatgatatccactcccctcaagttactgtctatgagtc 2877346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 7e-62; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 124 - 404
Target Start/End: Complemental strand, 44223465 - 44223185
Alignment:
Q  124 tggcaggaaatgaaggttcaaggggtagtagaggatagattagtacttttgaagggtgttagtggtgcagttaggcctggtgttctcactgccttaatgg 223  Q
    ||||||||||||||||  ||||| ||   ||| || |||||||| |||||||||||||||||||||||| | ||||| ||||||||||| || || ||||    
T  44223465 tggcaggaaatgaaggagcaaggtgttagagaagacagattagtgcttttgaagggtgttagtggtgcattcaggcccggtgttctcacagctttgatgg 44223366  T
Q  224 gagttagtggagctggtaaaactactttaatggatgttttggctggtaggaaaactggtggttatattgacgggagcataaaaatttctgggtaccctaa 323  Q
    | || ||||||||||||||||| ||| | ||||||||| |||||||||||||||| ||||| |||||||| ||   ||| ||  ||||||||||||||||    
T  44223365 gtgtaagtggagctggtaaaacaactctgatggatgttctggctggtaggaaaacaggtggatatattgatggagacatcaaggtttctgggtaccctaa 44223266  T
Q  324 aaaacaagaaacgtttgctcgaatctctggttattgtgagcagaatgatatccattctcctcatgttactgtctatgagtc 404  Q
    ||| |||||||| |||||| |||| ||||| || ||||||||||||||||||||||| || |||||||| || ||||||||    
T  44223265 aaagcaagaaacatttgctagaatttctggctactgtgagcagaatgatatccattcaccgcatgttacagtttatgagtc 44223185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 124 - 404
Target Start/End: Complemental strand, 44234287 - 44234007
Alignment:
Q  124 tggcaggaaatgaaggttcaaggggtagtagaggatagattagtacttttgaagggtgttagtggtgcagttaggcctggtgttctcactgccttaatgg 223  Q
    ||||||||||||||||  ||||| ||   |||||| |||||||| |||||||||||||||||||| ||| | ||||||||||| || || || || ||||    
T  44234287 tggcaggaaatgaaggagcaaggtgttacagaggacagattagtgcttttgaagggtgttagtggcgcattcaggcctggtgtacttacggctttgatgg 44234188  T
Q  224 gagttagtggagctggtaaaactactttaatggatgttttggctggtaggaaaactggtggttatattgacgggagcataaaaatttctgggtaccctaa 323  Q
    | || ||||||||||||||||| ||| | ||||||||| |||||||||||||||| ||||| |||||||| ||   ||| ||  |||||||||| |||||    
T  44234187 gtgtaagtggagctggtaaaacaactctgatggatgttctggctggtaggaaaacaggtggatatattgatggagacatcaaggtttctgggtatcctaa 44234088  T
Q  324 aaaacaagaaacgtttgctcgaatctctggttattgtgagcagaatgatatccattctcctcatgttactgtctatgagtc 404  Q
    ||| |||||||| |||||| ||||||| ||||| ||||||||||||||||||||||| ||||||||||| || ||||||||    
T  44234087 aaagcaagaaacatttgctagaatctccggttactgtgagcagaatgatatccattcacctcatgttacagtttatgagtc 44234007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 124 - 401
Target Start/End: Complemental strand, 44211303 - 44211026
Alignment:
Q  124 tggcaggaaatgaaggttcaaggggtagtagaggatagattagtacttttgaagggtgttagtggtgcagttaggcctggtgttctcactgccttaatgg 223  Q
    ||||||||||||||||  ||||| ||   |||||| ||| |||| ||||||||||||||||| |||||| | ||||| ||||||||||| || || ||||    
T  44211303 tggcaggaaatgaaggagcaaggtgttacagaggacagactagtgcttttgaagggtgttagcggtgcattcaggcccggtgttctcacagctttgatgg 44211204  T
Q  224 gagttagtggagctggtaaaactactttaatggatgttttggctggtaggaaaactggtggttatattgacgggagcataaaaatttctgggtaccctaa 323  Q
    | || ||||||||||||||||| ||| | ||||||||| |||||||||||||||| ||||| |||||||| ||   ||| ||  ||||||||||||||||    
T  44211203 gtgtaagtggagctggtaaaacaactctgatggatgttctggctggtaggaaaacaggtggatatattgatggagacatcaaggtttctgggtaccctaa 44211104  T
Q  324 aaaacaagaaacgtttgctcgaatctctggttattgtgagcagaatgatatccattctcctcatgttactgtctatga 401  Q
    ||| |||||||| |||||| |||| ||||| || ||||| ||||||||||| ||||| ||||||||||| || |||||    
T  44211103 aaagcaagaaacatttgctagaatatctggctactgtgaacagaatgatattcattcacctcatgttacagtttatga 44211026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 186 - 293
Target Start/End: Complemental strand, 43457796 - 43457689
Alignment:
Q  186 tggtgcagttaggcctggtgttctcactgccttaatgggagttagtggagctggtaaaactactttaatggatgttttggctggtaggaaaactggtggt 285  Q
    ||||||| | |||||||| ||||| || || ||||||||||||||||||||||| || || ||||| ||||||||||| ||||| ||||| || ||||||    
T  43457796 tggtgcattcaggcctggagttctaacggctttaatgggagttagtggagctggaaagacaactttgatggatgttttagctggaaggaagacaggtggt 43457697  T
Q  286 tatattga 293  Q
    || |||||    
T  43457696 tacattga 43457689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 194 - 401
Target Start/End: Complemental strand, 39589546 - 39589339
Alignment:
Q  194 ttaggcctggtgttctcactgccttaatgggagttagtggagctggtaaaactactttaatggatgttttggctggtaggaaaactggtggttatattga 293  Q
    |||||||||||||||||||||| |||||||| || |  || ||||| |||||||||||  |||||||  |  ||||||| ||||||||||| |||||||     
T  39589546 ttaggcctggtgttctcactgctttaatgggcgtcacgggtgctggaaaaactactttgttggatgtgctttctggtagaaaaactggtggatatattgg 39589447  T
Q  294 cgggagcataaaaatttctgggtaccctaaaaaacaagaaacgtttgctcgaatctctggttattgtgagcagaatgatatccattctcctcatgttact 393  Q
     |||| ||| | ||||||||| || ||||| || |||||||| |||||  |||| ||||| || |||||||| ||||||||||| |||||||||||||||    
T  39589446 tgggaccatcacaatttctggatatcctaagaagcaagaaacatttgcaagaatttctggatactgtgagcaaaatgatatccactctcctcatgttact 39589347  T
Q  394 gtctatga 401  Q
    || |||||    
T  39589346 gtatatga 39589339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 169 - 401
Target Start/End: Complemental strand, 39547743 - 39547511
Alignment:
Q  169 cttttgaagggtgttagtggtgcagttaggcctggtgttctcactgccttaatgggagttagtggagctggtaaaactactttaatggatgttttggctg 268  Q
    |||||||||||||| ||||| ||  | || |||||||||||||||||  | ||||| || | ||| || || ||||| ||| | ||||||||  |  |||    
T  39547743 cttttgaagggtgtaagtggagctttcagacctggtgttctcactgctctgatgggtgtgactggtgcaggcaaaacaactctgatggatgtactttctg 39547644  T
Q  269 gtaggaaaactggtggttatattgacgggagcataaaaatttctgggtaccctaaaaaacaagaaacgtttgctcgaatctctggttattgtgagcagaa 368  Q
    |||| ||||||||||| |||||||  |||| ||| | ||| ||||| || || || || ||||| || |||||  |||| || || || |||||||| |     
T  39547643 gtagaaaaactggtggatatattggtgggaacatcacaatatctggctatccaaagaagcaagatacctttgcaagaatttcaggatactgtgagcaaac 39547544  T
Q  369 tgatatccattctcctcatgttactgtctatga 401  Q
    |||||||||||||||||||||||||||||||||    
T  39547543 tgatatccattctcctcatgttactgtctatga 39547511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 169 - 401
Target Start/End: Complemental strand, 39564522 - 39564290
Alignment:
Q  169 cttttgaagggtgttagtggtgcagttaggcctggtgttctcactgccttaatgggagttagtggagctggtaaaactactttaatggatgttttggctg 268  Q
    |||||||||||||| ||||| ||  | || |||||||||||||||||  ||||||| || |  || ||||| ||||| ||| | ||||||||  |  |||    
T  39564522 cttttgaagggtgtaagtggagctttcagacctggtgttctcactgctctaatgggtgtgaccggtgctggcaaaacaactctgatggatgtgctttctg 39564423  T
Q  269 gtaggaaaactggtggttatattgacgggagcataaaaatttctgggtaccctaaaaaacaagaaacgtttgctcgaatctctggttattgtgagcagaa 368  Q
    |||||||||| || || |||||||  |||| ||| | |||||| || |  || || || |||||||| |||||  |||| ||||| || |||||||| ||    
T  39564422 gtaggaaaaccggaggatatattggtgggaacatcacaatttccggctttccaaagaagcaagaaacctttgcaagaatttctgggtactgtgagcaaaa 39564323  T
Q  369 tgatatccattctcctcatgttactgtctatga 401  Q
    ||||||||| |||||| ||||||||||||||||    
T  39564322 tgatatccactctccttatgttactgtctatga 39564290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 401
Target Start/End: Original strand, 39338675 - 39338810
Alignment:
Q  266 ctggtaggaaaactggtggttatattgacgggagcataaaaatttctgggtaccctaaaaaacaagaaacgtttgctcgaatctctggttattgtgagca 365  Q
    ||||||| ||||||||||| |||||||  |||| ||| |||||||| || |  || || || |||||||| |||||  |||| ||||| || ||||||||    
T  39338675 ctggtagaaaaactggtggatatattggtgggaacatcaaaatttccggctttccaaagaagcaagaaacctttgcaagaatttctggatactgtgagca 39338774  T
Q  366 gaatgatatccattctcctcatgttactgtctatga 401  Q
     | |||||||||||||||||||||||||||||||||    
T  39338775 aactgatatccattctcctcatgttactgtctatga 39338810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 235 - 401
Target Start/End: Original strand, 39353487 - 39353653
Alignment:
Q  235 gctggtaaaactactttaatggatgttttggctggtaggaaaactggtggttatattgacgggagcataaaaatttctgggtaccctaaaaaacaagaaa 334  Q
    ||||| ||||| ||| ||||||||||  |  ||||||| ||||| ||||| |||||||  |||| ||| | |||||| || || || ||||| |||||||    
T  39353487 gctggaaaaacaactctaatggatgtgctttctggtagaaaaaccggtggatatattggtgggaacatcacaatttccggctatccaaaaaagcaagaaa 39353586  T
Q  335 cgtttgctcgaatctctggttattgtgagcagaatgatatccattctcctcatgttactgtctatga 401  Q
    | |||||  |||| ||||| || |||||||| | |||||||||||||||| ||||||||||||||||    
T  39353587 cctttgcaagaatttctggatactgtgagcaaactgatatccattctccttatgttactgtctatga 39353653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 266 - 401
Target Start/End: Original strand, 39366028 - 39366163
Alignment:
Q  266 ctggtaggaaaactggtggttatattgacgggagcataaaaatttctgggtaccctaaaaaacaagaaacgtttgctcgaatctctggttattgtgagca 365  Q
    ||||||| ||||||||||| |||||||  |||| ||| | ||| ||||| || || || || |||||||| |||||  |||| ||||| || || |||||    
T  39366028 ctggtagaaaaactggtggatatattggtgggaacatcacaatatctggctatccaaagaagcaagaaacctttgcaagaatttctggatactgcgagca 39366127  T
Q  366 gaatgatatccattctcctcatgttactgtctatga 401  Q
     | |||||||||||||||||||||||||||||||||    
T  39366128 aactgatatccattctcctcatgttactgtctatga 39366163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 169 - 404
Target Start/End: Complemental strand, 39575333 - 39575098
Alignment:
Q  169 cttttgaagggtgttagtggtgcagttaggcctggtgttctcactgccttaatgggagttagtggagctggtaaaactactttaatggatgttttggctg 268  Q
    |||||||| ||||| || || ||  ||||||| ||||||||||||||  | ||||| || | ||| ||||| ||||| ||||| ||||||||  | ||||    
T  39575333 cttttgaacggtgtcagcggagcttttaggccaggtgttctcactgcacttatgggtgtcactggtgctggcaaaacaactttgatggatgtacttgctg 39575234  T
Q  269 gtaggaaaactggtggttatattgacgggagcataaaaatttctgggtaccctaaaaaacaagaaacgtttgctcgaatctctggttattgtgagcagaa 368  Q
    ||||||||| ||| || ||||||   |||| ||| | | |||| ||| | || ||||| |||||||| |||||  |||| || || || |||||||| ||    
T  39575233 gtaggaaaagtgggggatatattagtgggaacatcacagtttccgggcatcccaaaaagcaagaaacctttgcaagaatttccggatactgtgagcaaaa 39575134  T
Q  369 tgatatccattctcctcatgttactgtctatgagtc 404  Q
    |||||| || ||||||||| |||| |||||||||||    
T  39575133 tgatatacactctcctcatattacggtctatgagtc 39575098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 266 - 401
Target Start/End: Complemental strand, 39538188 - 39538053
Alignment:
Q  266 ctggtaggaaaactggtggttatattgacgggagcataaaaatttctgggtaccctaaaaaacaagaaacgtttgctcgaatctctggttattgtgagca 365  Q
    ||||||| ||||||||||| |||||||  |||| ||| | ||||||||| || || || || ||||| || |||||  |||| || || || ||||||||    
T  39538188 ctggtagaaaaactggtggatatattggtgggaacatcacaatttctggctatccaaagaagcaagatacctttgcaagaatttcaggatactgtgagca 39538089  T
Q  366 gaatgatatccattctcctcatgttactgtctatga 401  Q
     | |||||||||||||||| ||||||||||||||||    
T  39538088 aactgatatccattctccttatgttactgtctatga 39538053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 401
Target Start/End: Complemental strand, 42133195 - 42133047
Alignment:
Q  253 atggatgttttggctggtaggaaaactggtggttatattgacgggagcataaaaatttctgggtaccctaaaaaacaagaaacgtttgctcgaatctctg 352  Q
    |||||||| || || || || ||||| ||||| |||||||| || || || || || ||||| ||||| || || |||  ||| ||||||||| ||  ||    
T  42133195 atggatgtattagccggaagaaaaacaggtggatatattgaaggaagtattaacatctctggttacccaaagaaccaaacaacatttgctcgagtcagtg 42133096  T
Q  353 gttattgtgagcagaatgatatccattctcctcatgttactgtctatga 401  Q
    ||||||||||||| |||||||| ||||||||  |||| |||||||||||    
T  42133095 gttattgtgagcaaaatgatattcattctccctatgtaactgtctatga 42133047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 406
Target Start/End: Complemental strand, 42171890 - 42171835
Alignment:
Q  351 tggttattgtgagcagaatgatatccattctcctcatgttactgtctatgagtcac 406  Q
    |||||| || || ||||||||||| |||||||||||||||||||||||||| ||||    
T  42171890 tggttactgcgaacagaatgatattcattctcctcatgttactgtctatgaatcac 42171835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 404
Target Start/End: Complemental strand, 1084984 - 1084844
Alignment:
Q  266 ctggtaggaaaactggtggttatattgacgggagcataaaaatttctgggtaccc-taaaaaa-caagaaacgtttgctcgaatctctggttattgtgag 363  Q
    ||||||| ||||||| ||| |||||||  |||| ||| | ||||||||| || || || |||| |||||||| ||| |  |||| ||||| || ||||||    
T  1084984 ctggtagaaaaactgatggatatattggtgggaacatcataatttctggctatccatagaaaagcaagaaacatttacaagaatttctggatactgtgag 1084885  T
Q  364 cagaatgatatccattctcctcatgttactgtctatgagtc 404  Q
    || |  |||||||||||||||||| |||||||||| |||||    
T  1084884 caaatagatatccattctcctcattttactgtctacgagtc 1084844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 168 - 401
Target Start/End: Complemental strand, 2161114 - 2160881
Alignment:
Q  168 acttttgaagggtgttagtggtgcagttaggcctggtgttctcactgccttaatgggagttagtggagctggtaaaactactttaatggatgttttggct 267  Q
    ||||||||||||| | | ||| ||  |||||||||| || || ||||| || ||||| || ||||| || || || |||||| ||||||||||||| |||    
T  2161114 acttttgaagggtatcaatggcgcctttaggcctggagtactaactgctttgatgggtgtaagtggtgccggaaagactactctaatggatgttttagct 2161015  T
Q  268 ggtaggaaaactggtggttatattgacgggagcataaaaatttctgggtaccctaaaaaacaagaaacgtttgctcgaatctctggttattgtgagcaga 367  Q
    || |||||||||||||| |||||||| || | ||| | ||| || || || || || || ||| |||| |||||||| || || || ||||| |||||      
T  2161014 ggaaggaaaactggtggatatattgatggaaacatcacaatatccggctatccaaagaatcaaaaaacatttgctcgcatatcgggatattgcgagcaat 2160915  T
Q  368 atgatatccattctcctcatgttactgtctatga 401  Q
     |||||||||||| ||| ||||||| || |||||    
T  2160914 ttgatatccattcacctaatgttacagtttatga 2160881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 269
Target Start/End: Complemental strand, 2149131 - 2149030
Alignment:
Q  168 acttttgaagggtgttagtggtgcagttaggcctggtgttctcactgccttaatgggagttagtggagctggtaaaactactttaatggatgttttggct 267  Q
    ||||||||||||||||||||||||  |||| ||||| || || || || || ||||| || ||||| ||||| || |||||||||||||||||||| |||    
T  2149131 acttttgaagggtgttagtggtgcttttagacctggagtactaacagctttgatgggtgtaagtggtgctggaaagactactttaatggatgttttagct 2149032  T
Q  268 gg 269  Q
    ||    
T  2149031 gg 2149030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 251 - 302
Target Start/End: Complemental strand, 41687821 - 41687770
Alignment:
Q  251 taatggatgttttggctggtaggaaaactggtggttatattgacgggagcat 302  Q
    ||||||||||| | ||||| || |||||||||||||||||||| ||||||||    
T  41687821 taatggatgttcttgctggaagaaaaactggtggttatattgaagggagcat 41687770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 194 - 393
Target Start/End: Original strand, 4501169 - 4501368
Alignment:
Q  194 ttaggcctggtgttctcactgccttaatgggagttagtggagctggtaaaactactttaatggatgttttggctggtaggaaaactggtggttatattga 293  Q
    |||||||||| ||||| |||||  |||||||||||||||| || || || || ||||||||||||||||| || || || || |||||||| || |||||    
T  4501169 ttaggcctggagttcttactgcactaatgggagttagtggtgccgggaagacaactttaatggatgttttagcaggaagaaagactggtggctacattga 4501268  T
Q  294 cgggagcataaaaatttctgggtaccctaaaaaacaagaaacgtttgctcgaatctctggttattgtgagcagaatgatatccattctcctcatgttact 393  Q
     ||     | | ||| ||||| |||||||| || |||||||| |||||  || | |||||||||||||| || | |||||| ||||| ||||| ||||||    
T  4501269 aggagatgttagaatctctggataccctaagaaccaagaaacctttgcaagagtttctggttattgtgaacaaactgatattcattcacctcaagttact 4501368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 401
Target Start/End: Original strand, 49773210 - 49773298
Alignment:
Q  313 gggtaccctaaaaaacaagaaacgtttgctcgaatctctggttattgtgagcagaatgatatccattctcctcatgttactgtctatga 401  Q
    ||||||||||| || |||||||| ||| |||| || || || || |||||||| | ||||||||| ||||| |||||||||||||||||    
T  49773210 gggtaccctaagaagcaagaaacattttctcggatatcaggatactgtgagcaaactgatatccactctccccatgttactgtctatga 49773298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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