View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14716_high_1 (Length: 723)
Name: NF14716_high_1
Description: NF14716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14716_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-154; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 413 - 702
Target Start/End: Complemental strand, 3807884 - 3807593
Alignment:
| Q |
413 |
attatatttttcatgttggtagctgttagaatgtattctgattttaaatgttgtctgatgaagatgcattcaatgtccaatgtgtttaggtatttcattg |
512 |
Q |
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| T |
3807884 |
attatatttttcatgttggtagctgttagaatgtattctgattttaaatgttgtctgatgaagatgcaatcaatgtccaatgtgtttaggtatttcattg |
3807785 |
T |
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| Q |
513 |
gctgttagattatcttctatctaaattgcttacttattatcatagaacaccatagtggaagaaattaaaattcaaaggataaagaagttgttggatcaag |
612 |
Q |
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| T |
3807784 |
gctgttagattatcttctatctaaattgcttacttattatcatagaacaccatagtggaagaaattaaaattcaaaggataaagaagttgttggatcaag |
3807685 |
T |
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| Q |
613 |
agaatttcactagtgagataagacattgacc--tacatcctacctttagtaatgcttgagttttcaattttacagtatgagtaaacatgtct |
702 |
Q |
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| T |
3807684 |
agaatttcactagtgagataagacattgacctatacatcctacctttagtaatgcttgagttttcaattttacagtatgagtaaacatgtct |
3807593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 172 - 381
Target Start/End: Complemental strand, 3808083 - 3807879
Alignment:
| Q |
172 |
tttcgtgtggttgattatcttgtttaacaaatgtatcctctctactttgatgatgatgagacatgatgttgcatgctatatgttgttttggtatttgata |
271 |
Q |
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| T |
3808083 |
tttcgtgtggttgattatcttgtttaacaaatgtattatct------tgatgatgatgagacatgatgttgcatgctatatgttgttttggtatttgata |
3807990 |
T |
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| Q |
272 |
acttacatggaatgcactaaccggtaataggcacttatgtattatatgtttgactaagaccgtcttcaagcttgataa-ttgttaaaaatgcacattgat |
370 |
Q |
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| T |
3807989 |
acttacatggaatgcactaaccggtaataggcacttatgtattatatgtttgactaagaccgtcttcaagcttgataatttgttaaaaaggcacattgat |
3807890 |
T |
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| Q |
371 |
gagaaattata |
381 |
Q |
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| T |
3807889 |
gagaaattata |
3807879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 3808381 - 3808207
Alignment:
| Q |
1 |
ccaagtactaatagagaaccaaacacaaagtatcctagtcatgggaaagaggacaaaagcatgtttaaacatgcttctaaaaattgctaaggcaaatcgt |
100 |
Q |
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| T |
3808381 |
ccaagtactaatagagaaccaaacacaaagtatcctagtcatgggaaagaggacaaaagcatgtttaaacatgcttctaaaaattgctaaggcaaatcgt |
3808282 |
T |
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| Q |
101 |
acggtgaggattatactttagaatttttggtttaaagtaaatgtttatgttgccactttaattgatctctctttc |
175 |
Q |
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| T |
3808281 |
acggtgaggattatactttggagtttttggtttaaagtaaatgtttatgttgctacttaaattgatctctctttc |
3808207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 227 - 324
Target Start/End: Complemental strand, 209807 - 209710
Alignment:
| Q |
227 |
atgagacatgatgttgcatgctatatgttgttttggtatttgataacttacatggaatgcactaaccggtaataggcacttatgtattatatgtttga |
324 |
Q |
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| T |
209807 |
atgagtcatgacgttgcatgctacatgtggttttggtatttgataatttccatgcattgcacaaattagtaatatgcacttgtgtattctgtgtttga |
209710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 314
Target Start/End: Complemental strand, 206380 - 206293
Alignment:
| Q |
227 |
atgagacatgatgttgcatgctatatgttgttttggtatttgataacttacatggaatgcactaaccggtaataggcacttatgtatt |
314 |
Q |
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| T |
206380 |
atgagtcatgacgttgcatgctacatgtggttttggtatttgataatttccatgcattgcacaaattagtaatatgcacttgtgtatt |
206293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 227 - 324
Target Start/End: Original strand, 6901960 - 6902057
Alignment:
| Q |
227 |
atgagacatgatgttgcatgctatatgttgttttggtatttgataacttacatggaatgcactaaccggtaataggcacttatgtattatatgtttga |
324 |
Q |
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| T |
6901960 |
atgagtcatgacgttgcatgctacatgtgattttggtatttgataatttccatgcattgcacaaattagtaatatgcacttgtgtattctgtgtttga |
6902057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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