View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14716_high_11 (Length: 287)
Name: NF14716_high_11
Description: NF14716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14716_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 277
Target Start/End: Original strand, 10569605 - 10569863
Alignment:
| Q |
19 |
atgtcctgaattctctttttaactcattcttgtcatataaaa-accagtatagcaagataaaaaatgcaggaaattaatatgtggaaaatcaaaacgtaa |
117 |
Q |
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| T |
10569605 |
atgtcctgaattctctttttaactcattcttgtcatataaaaaaccagtatagcaagataaaaaatgcaggaaattaatatgtggaaaatcaaaacgtaa |
10569704 |
T |
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| Q |
118 |
tacataaccaacaactaaaaataaaaacgtgatttggaaataatccttgataccatatattaatcaatataatataaaggttttcaaaaatgcaatcata |
217 |
Q |
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| T |
10569705 |
tacataaccaacaactaaaaataaaaacgtgatttggaaataatccttgataccatatattaatcaatataatataaaggttttcaaaaatgcaatcata |
10569804 |
T |
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| Q |
218 |
atagtagtacactacaacaaactttcagaccaactcattcacggtgggcgtttatgatga |
277 |
Q |
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| T |
10569805 |
atagtagtacactacaacaaactttcagaccaactcattcacggt-ggcgtttaggatga |
10569863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 57 - 190
Target Start/End: Original strand, 10552147 - 10552279
Alignment:
| Q |
57 |
aaaaaccagtatagcaagataaaaaatgcaggaaattaatatgtggaaaatcaaaacgtaatacataaccaacaactaaaaataaaaacgtgatttggaa |
156 |
Q |
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| T |
10552147 |
aaaaagcagtgtagcaaaacacaaaatgcaacaaattagtatgtg-aaaatcaaaatgtaatatagaacccacaattgaaaatcaaaacgtgattttgaa |
10552245 |
T |
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| Q |
157 |
ataatccttgataccatatattaatcaatataat |
190 |
Q |
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| T |
10552246 |
ataatcctttataccatatattaatcaatataat |
10552279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 10552317 - 10552359
Alignment:
| Q |
217 |
aatagtagtacactacaacaaactttcagaccaactcattcac |
259 |
Q |
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| T |
10552317 |
aatagtagtacactacaacaaggtttcagaccaactcattcac |
10552359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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