View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14716_high_12 (Length: 285)
Name: NF14716_high_12
Description: NF14716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14716_high_12 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 147 - 285
Target Start/End: Original strand, 36701811 - 36701949
Alignment:
| Q |
147 |
aacaatttctgtcttatttatggttgtttataatttgctgattcaaatcatgagatagtaggacttaattccacaaatgctaaacaagcataggtggatt |
246 |
Q |
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| T |
36701811 |
aacaatttctgtcttatttatggttgtttataatttgctgattcaaatcatgagatagtaggacttaattccacaaatgctaaacaagcataggtggatt |
36701910 |
T |
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| Q |
247 |
cattctctgaagatttattatacctagcaatatgtatca |
285 |
Q |
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| T |
36701911 |
cattctctgaagatttattatacctagcaatatgtatca |
36701949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 36701231 - 36701352
Alignment:
| Q |
18 |
gaaacctagggagctatttattaaacaatttaataaatacataacgtaggcataagttatctatgtacgtaac-nnnnnnnnngttatttatgtacaatg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36701231 |
gaaacctagggagctatttattaaacaatttaataaatacataacgtaggcataagttatctatgtacgtaacaaaaaaagaagttatttatgtacaatg |
36701330 |
T |
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| Q |
117 |
gaggcatttctgtctaattatt |
138 |
Q |
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| T |
36701331 |
gaggcatttctgtctaattatt |
36701352 |
T |
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