View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14716_high_7 (Length: 356)
Name: NF14716_high_7
Description: NF14716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14716_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 24 - 344
Target Start/End: Complemental strand, 10569512 - 10569192
Alignment:
| Q |
24 |
cgttgcacctaacatgatatgcgtttcagagcaatcaaccatcgctacttgttgaaagaagatgattgttattttaaagatttagcnnnnnnnaagtgtt |
123 |
Q |
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| T |
10569512 |
cgttgcacctaacatgatatgcgtttcagagcaatcaaccatcgctacttgttgaaagaagatgattgttattttaaagatttagctttttttaagtgtt |
10569413 |
T |
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| Q |
124 |
accatcatcatagttttatttataaggatttcgatactataagcttatgaaagtatgagttattgggaatttattaaggaattattttgtaattttttgt |
223 |
Q |
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| T |
10569412 |
accatcatcataggtttatttaaaaggatttcgatactataagcttatgaaagtatgagttattgggaatttattaaggaattattttgtaattttttgt |
10569313 |
T |
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| Q |
224 |
tttaaactgagattgatgctactgttacttttctatataggaaggtctacctttaaggtcatttaacattatctattctttcaagttatacattttttct |
323 |
Q |
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| T |
10569312 |
tttaaactgagattgatgctactgttacttttctatataggaaggtctacctttaaggtcatttaacattatctattctttcaagttatacatcttttct |
10569213 |
T |
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| Q |
324 |
tgcttgagtgtgtttgatatt |
344 |
Q |
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| T |
10569212 |
tgcttgagtgtgtttgatatt |
10569192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 10552004 - 10551768
Alignment:
| Q |
1 |
caggatcacgttcttgctgttgtcgttgcacctaacatgatatgcgtttcagagcaatcaaccatcgctacttgttgaaagaagatgattgttattttaa |
100 |
Q |
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| T |
10552004 |
caggatcacgttcttgctgttgtcgttgcacctaacatgatatgtgttccagagcaatcaaccatcgctacttgttgaaagaagatgattgttattttaa |
10551905 |
T |
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| Q |
101 |
----agatttagcnnnnnnnaagtgttaccatcatcatagttttatttataaggatttcgatactataagcttatgaaagtatgagttattgggaattta |
196 |
Q |
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| T |
10551904 |
atatatattttgctttttttaagtgttaccatcatcattgttttatttttaaggatttcgatactattagcttatgaaagtatgaggtattgggaa-tta |
10551806 |
T |
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| Q |
197 |
ttaaggaattattttgtaa-ttttttgttttaaactga |
233 |
Q |
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| T |
10551805 |
ttaaggaattattttgtaatttttttgttttaaactga |
10551768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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