View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14716_high_9 (Length: 344)
Name: NF14716_high_9
Description: NF14716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14716_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 6090341 - 6089995
Alignment:
| Q |
1 |
caccggagtagcaaagtaggagaagacattaggcgatgctcctatcatcctgtggctgctaatgaaggagttcacaacaatatggcatccacttcaagta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6090341 |
caccggagtagcaaagtaggagaagacattaggcgatgctcctatcatcctgtggctggtaatgaaggagttcacaacaatatggcatccacttcaagta |
6090242 |
T |
|
| Q |
101 |
atccaccagaagctgtgaatagatcaattcattcaatacaagttcaaggtaaataaaaagcagtttttaccagtactcctttccagattagatgtgttaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6090241 |
atccaccagaagctgtgaatagatcaattcattcaatacaagttcaaggtaaatgaaaagcagtttttaccggtactcctttccagattagatgtgttaa |
6090142 |
T |
|
| Q |
201 |
ttgattatgatttatctc--------------------ttgtcacgatttaattattgaaataatcaactttgagatgataaaattatcaaaaaaggaaa |
280 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6090141 |
ttgattatgatttatctcttgttacttgttttactaaattgtcacgatttaattattgaaataatcaactttgagatgataaaattatcaaaaaaggaaa |
6090042 |
T |
|
| Q |
281 |
acagttttctttacac-----atatacaagattatgttttaaagtta |
322 |
Q |
| |
|
|||||||||||||||| ||||| | |||||||||||||||||| |
|
|
| T |
6090041 |
acagttttctttacacatgcaatataaacgattatgttttaaagtta |
6089995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 6209883 - 6209799
Alignment:
| Q |
27 |
cattaggcgatgctcc---tatcatcctgtggctgctaatgaaggagttcacaacaatatggcatccacttcaagtaatccacca |
108 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6209883 |
cattaggcgatgctccaattatcctcctgtggctggtaaagaaggagttcacaacaatatggcatccacttcaagtaatccacca |
6209799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 6111283 - 6111232
Alignment:
| Q |
64 |
gaaggagttcacaacaatatggcatccacttcaagtaatccaccagaagctg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6111283 |
gaaggagttcacaacaatatggcatccacttcaagtaatccaccagaagctg |
6111232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 6183390 - 6183344
Alignment:
| Q |
62 |
atgaaggagttcacaacaatatggcatccacttcaagtaatccacca |
108 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6183390 |
atgaaggagtttacaacaacatggcatccacttcaagtaatccacca |
6183344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 6250936 - 6250890
Alignment:
| Q |
62 |
atgaaggagttcacaacaatatggcatccacttcaagtaatccacca |
108 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6250936 |
atgaaggagtttacaacaacatggcatccacttcaagtaatccacca |
6250890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 6102132 - 6102091
Alignment:
| Q |
65 |
aaggagttcacaacaatatggcatccacttcaagtaatccac |
106 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
6102132 |
aaggacttcgcaacaatatggcatccacttcaactaatccac |
6102091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University