View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14716_low_15 (Length: 246)
Name: NF14716_low_15
Description: NF14716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14716_low_15 |
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| [»] chr7 (8 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 6089717 - 6089944
Alignment:
| Q |
19 |
ctagccatatatcaacttcttgcttgcgcttttttccatgagactttaatcgttgaagttgttttgtaatatcattttcctcacattctagatcaaaaac |
118 |
Q |
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| T |
6089717 |
ctagccatatatcaacttcttgcttgcgcttttttccatgagactttaatcgttgaagttgttttgtaatataattttcctcacattctagatcaaaaac |
6089816 |
T |
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| Q |
119 |
caattgttttaagtgattaacctcatttccgaaaacacttctattacaaccgctcctgttcacacctgttccattgtttttgtgatgttaaattatttaa |
218 |
Q |
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| T |
6089817 |
caattgttttaagtgattaacctcatttccaaaaacacttctattacaaccgctcctgttcacacctgttccattgtttttgtgatgttaaattatttaa |
6089916 |
T |
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| Q |
219 |
cagttaaaacaatacaacgtaaatttgg |
246 |
Q |
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| T |
6089917 |
cagttgaaacaatacaacgtaaatttgg |
6089944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 208
Target Start/End: Original strand, 6106890 - 6107077
Alignment:
| Q |
21 |
agccatatatcaacttcttgcttgcgcttttttccatgagactttaatcgttgaagttgttttgtaatatcattttcctcacattctagatcaaaaacca |
120 |
Q |
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| T |
6106890 |
agccatacatcaacttctggtttgcgcttttttccccgagactccaaccattgaagttgttttgcaatatctttttcctcacattttaaatcaataacca |
6106989 |
T |
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| Q |
121 |
attgttttaagtgattaacctca-tttccgaaaacacttctattacaaccgctcctgttcacacctgttccattgtttttgtgatgtta |
208 |
Q |
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| T |
6106990 |
attgttttaattgattaatctcactttcagaaaa-acttctgttaccaccgctaccgtgcacacctgatccattatgtttgtcatgtta |
6107077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 75 - 195
Target Start/End: Original strand, 6181329 - 6181449
Alignment:
| Q |
75 |
agttgttttgtaatatcattttcctcacattctagatcaaaaaccaattgttttaagtgattaacctcatttccgaaaacacttctattacaaccgctcc |
174 |
Q |
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| T |
6181329 |
agttgttttgcaatatcgtttttatcacattccaaatcaataaccaattgttttaattgattaatctcactctcataaacacttatgttacaaccgctac |
6181428 |
T |
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| Q |
175 |
tgttcacacctgttccattgt |
195 |
Q |
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| T |
6181429 |
tgttcacacctgctccgttgt |
6181449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 208
Target Start/End: Original strand, 6208898 - 6209030
Alignment:
| Q |
76 |
gttgttttgtaatatcattttcctcacattctagatcaaaaaccaattgttttaagtgattaacctcatttccgaaaacacttctattacaaccgctcct |
175 |
Q |
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| T |
6208898 |
gttgctttgcaataacattttcctcgcattctaaatcaagaaccatttgttttatttgatcaatctcacttttggaaacacttctgttaccatcgctacc |
6208997 |
T |
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| Q |
176 |
gttcacacctgttccattgtttttgtgatgtta |
208 |
Q |
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| T |
6208998 |
gttcacacctgctccattgtgtttgtcatgtta |
6209030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 6248150 - 6248283
Alignment:
| Q |
75 |
agttgttttgtaatatcattttcctcacattctagatcaaaaaccaattgttttaagtgattaacctcatttccgaaaacacttctattacaaccgctcc |
174 |
Q |
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| T |
6248150 |
agttgttttgcaatatcgttttcatcacgttccaaatcaataaccaattgttttaattgattaatctcactctcataaacacttatgttgcaaccgctac |
6248249 |
T |
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| Q |
175 |
tgttcacacctgttccattgtttttgtgatgtta |
208 |
Q |
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| T |
6248250 |
tgttcatacctgctcagttgtgtttgtcatgtta |
6248283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 6095150 - 6095215
Alignment:
| Q |
70 |
gttgaagttgttttgtaatatcattttcctcacattctagatcaaaaaccaattgttttaagtgat |
135 |
Q |
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| T |
6095150 |
gttgcagttgttctgtaacatcatgttcctcacattctagattaagaactagttgttttaagtgat |
6095215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 6101602 - 6101658
Alignment:
| Q |
75 |
agttgttttgtaatatcattttcctcacattctagatcaaaaaccaattgttttaag |
131 |
Q |
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| T |
6101602 |
agttgttttataatataatttttctcatattctagatcaaaaaccacttcttttaag |
6101658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 195
Target Start/End: Original strand, 6213676 - 6213772
Alignment:
| Q |
99 |
tcacattctagatcaaaaaccaattgttttaagtgattaacctcatttccgaaaacacttctattacaaccgctcctgttcacacctgttccattgt |
195 |
Q |
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| T |
6213676 |
tcacattctaaatcaataaccaattggtttaattgattattctcactttcataaacatttctgttaccaccgctaacgttcacacctgctccattgt |
6213772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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