View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14716_low_2 (Length: 509)
Name: NF14716_low_2
Description: NF14716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14716_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 496
Target Start/End: Complemental strand, 22071128 - 22070646
Alignment:
| Q |
18 |
tgatgtgcatgcattagggccatatttaagttgtattattttctccacatatattagcatgaatccaagatcaattaaaaaccagtacagaaaatttgag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22071128 |
tgatgtgcatgcattagggccatatttaagttgtatt---ttctccacatatattagcatgaatccaagatcaattaaaaaccagtacagaaaatttgag |
22071032 |
T |
|
| Q |
118 |
ttgaaatcaaataacttcctatcaagggtttaataatacaaaatgcaagaaagagnnnnnnntgttcattc---------gagatggttgttgaggagct |
208 |
Q |
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| T |
22071031 |
ttgaaatcaaataacttcctatcaagggtttaataatacaaaatgcaagaaagagaaaaa--tgttcattcatctaagtagagatggttgttgaggagct |
22070934 |
T |
|
| Q |
209 |
ggccttcgctgaattgcggcaacagcctttaaccgtgcagccgtgaatacaaacctgcaccaaagacaacatgggggttatgctgttgaaatcaaattct |
308 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
22070933 |
ggccttcgctgaattgcggcaaccgcctttaaccgtgcagccgtgaatacaaacctgcaccaaaggcaacatgggggttattttgttgaaatcaaattct |
22070834 |
T |
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| Q |
309 |
atatcccaaaaatatattcatacttaaatttaggacagataatcaagctctaattaaaaactgaaataggatcattcaattatttgggcataatatctgt |
408 |
Q |
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| T |
22070833 |
atatcccaaaaatatattcatacttaaatttaggacagataatcaagctctaattaaaaactgaaataggatcattcaattatttgggcataatatctgt |
22070734 |
T |
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| Q |
409 |
atattttgatatactatacctgtataccatgcttcagttttgttaaaaatgttgtcaagaccaaatacataatcactcaagtataatc |
496 |
Q |
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| T |
22070733 |
atattttgatatactatacctgtataccatgcttcagttttgttaaaaatgttgtcaagaccaaatacataatcactcaagtataatc |
22070646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 27 - 172
Target Start/End: Original strand, 660256 - 660400
Alignment:
| Q |
27 |
tgcattagggccatatttaagttgtattattttctccacatatattagcatgaatccaagatcaattaaaaaccagtacagaaaatttgagttgaaatca |
126 |
Q |
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||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| ||| |||||| ||| || |||| |||||||||| || |
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| T |
660256 |
tgcattagggctttatttgagttgtatt---ttctccacatatattagcatgaatccaagataaatgaaaaactagttcaagaaatctgagttgaaacca |
660352 |
T |
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| Q |
127 |
aataacttcctatcaagggtttaata--atacaaaatgcaagaaagag |
172 |
Q |
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| T |
660353 |
aataacttcctacctaggcatgaataatatacaaaatgcaagaaagag |
660400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 27 - 172
Target Start/End: Complemental strand, 22065159 - 22065017
Alignment:
| Q |
27 |
tgcattagggccatatttaagttgtattattttctccacatatattagcatgaatccaagatcaattaaaaaccagtacagaaaatttgagttgaaatca |
126 |
Q |
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||||||| || ||||||||||||||||| |||||||||||| | | ||||||||||||||||| ||||||| ||| || ||||||||||||||||| |
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| T |
22065159 |
tgcattaaggacatatttaagttgtatt---ttctccacatatgtaaacatgaatccaagatcaactaaaaactagttcaagaaatttgagttgaaatcg |
22065063 |
T |
|
| Q |
127 |
aataacttcctatcaagggtttaataatacaaaatgcaagaaagag |
172 |
Q |
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||||| ||||| | | | || |||| ||||||||||||||||||| |
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| T |
22065062 |
aataatttccttactatgcttaaatattacaaaatgcaagaaagag |
22065017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 26 - 128
Target Start/End: Complemental strand, 22082417 - 22082314
Alignment:
| Q |
26 |
atgcattagggccatatttaagttgtattattttctccacatatattag----catgaatccaagatcaattaaaaaccagtacagaaaatttgagttga |
121 |
Q |
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|||||||| |||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
22082417 |
atgcattacggccatatttaagttg---tattttctccacatatattagtatatatgaatcatagatcaattaaaaaccagtacaaaaaatttgagttga |
22082321 |
T |
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| Q |
122 |
aatcaaa |
128 |
Q |
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||||||| |
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| T |
22082320 |
aatcaaa |
22082314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 409
Target Start/End: Complemental strand, 22082247 - 22082172
Alignment:
| Q |
329 |
tacttaaatttaggacagataatcaagctctaattaaaaactgaaataggatcattcaattatttgggcataatatctgta |
409 |
Q |
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||||||||||||||||||||| ||| ||| |||| ||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
22082247 |
tacttaaatttaggacagatattcatgct----ttaacaac-gaaataggatcattcatttatttgggcataatatctgta |
22082172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 361
Target Start/End: Original strand, 660556 - 660602
Alignment:
| Q |
315 |
caaaaatatattcatacttaaatttaggacagataatcaagctctaa |
361 |
Q |
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| T |
660556 |
caaaaatatattcatacttaaattcatgacagataatcaaggtctaa |
660602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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