View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14716_low_3 (Length: 412)
Name: NF14716_low_3
Description: NF14716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14716_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 7 - 409
Target Start/End: Original strand, 660034 - 660434
Alignment:
| Q |
7 |
gaatgatggctatggacgtgtttagcaagaacaagagacttggtgagaaaataacacaaatcaaatcagatgaaatgaccaccacaatcaaatgaagtga |
106 |
Q |
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| T |
660034 |
gaatgatggctatggatgtgtttagcaagaacaagagacttggtgagaaaataacacaaatcaaatcagatgaaatgaccaccacaatcaaatgaagtga |
660133 |
T |
|
| Q |
107 |
tttggcgaaaatgtgcaactgcagcctataaaaacagatcaattccaacctcaacaatcaaaacaaaagcatcagtcagtgcttacattcatttttgtac |
206 |
Q |
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| T |
660134 |
tttggcgaaaatgtgcaactgcagcctataaaaacagatcaattccaacctcaacaatcaaaacaaaagcatcagtcagtgcttacattcatttttgtac |
660233 |
T |
|
| Q |
207 |
attgcgcttacaaaaggatcagtcattcacttatagtgttcaagtaaatgccaagcattttatatgcagtcatagattagattcacgcagttcaataatg |
306 |
Q |
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| T |
660234 |
attgcgcttacaaaaggatcggtcattcacttatagtgttcaagtaaatgccaagcattttatatgcagtcatagattagattcacgcagttcaataatg |
660333 |
T |
|
| Q |
307 |
aacatcaaccatggtttttgagctggcagcactacttagcctaattgtttacaacaaaacactacagtagaatttgtatatgctcatctaatcatcaata |
406 |
Q |
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| T |
660334 |
aacatcaaccatggtttttgagccggcagcgctacttagcctaattgtttacaacaaaacatgacagtagaatttg--tatgctcatcaaatcatcaata |
660431 |
T |
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| Q |
407 |
gta |
409 |
Q |
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| T |
660432 |
gta |
660434 |
T |
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Back To:
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Target: chr8 (Bit Score: 136; Significance: 8e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 113 - 409
Target Start/End: Original strand, 4633805 - 4634099
Alignment:
| Q |
113 |
gaaaatgtgcaactgcagcctataaaaacagatcaattccaacctcaacaatcaaaacaaaagcatcagtcagtgcttacattcatttttgtacattgcg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| | |||| || |||||||| |||||||||| |
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| T |
4633805 |
gaaaatgtgcaactgcagcctataaaaacagatcaacatcaaactcaacaatcaaaacaaaagcatcaattagtgattttattcatttctgtacattgca |
4633904 |
T |
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| Q |
213 |
cttacaaaaggatcagtcattcacttatagtgttcaag-taaatgccaagcattttatatgc--agtcatagattagattcacgcagttcaataatgaac |
309 |
Q |
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| T |
4633905 |
cctacaaaagcatcag----tcacttctggtgttcaagttaaatgccaaccatcttatatgcctagtcatactttctattcacgcagttcaataatagac |
4634000 |
T |
|
| Q |
310 |
atcaaccatggtttttgagctggcagcactacttagcctaattgtttacaacaaaacactacagtagaatttgtatatgctcatctaatcatcaatagta |
409 |
Q |
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| T |
4634001 |
atcaactatggtttttgagccggcagcgctacttagcctaattgtttacatcaaaacatgacagtagaatttgta-atgctcatcaaatcatcaatagta |
4634099 |
T |
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