View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14716_low_4 (Length: 404)
Name: NF14716_low_4
Description: NF14716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14716_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 10 - 386
Target Start/End: Original strand, 11025627 - 11025996
Alignment:
| Q |
10 |
agtagcaaaggagaccggggcagaagggaagcatggacggcacagataagtttgcgggggaagaggatgaggaggcttcgtaggagaagatggagctgac |
109 |
Q |
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| T |
11025627 |
agtagaaaaggagaccggggcagaagggaagcatggacggcacagataagtttgcgggggaagaggatgaggaggcttcgtaggagaagatggagctgac |
11025726 |
T |
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| Q |
110 |
tgatcaatgacagatgtctattgaattaccaaaacaagggaaggaataggtaatccctgagacttggactcggacactggacacaatgggagatataaag |
209 |
Q |
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| T |
11025727 |
tgatcaatgacagatgtctattgaattaccaaaacaagggaaggaataggtaatccctgagacttggactcggac-------acaatgggagatataaag |
11025819 |
T |
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| Q |
210 |
agtggtgtatcctcaaagaatgtgacatcaacaaacatgtagaagctatgcgttgatggacaatagcacttatatcctttctaaactcttgaattgctga |
309 |
Q |
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| T |
11025820 |
agtggtgtatcctcaaagaatgtgacatcaacaaacatgtagaagctatgcgttgatggacaatagcacttatatcctttctaaactcttgaatcgctga |
11025919 |
T |
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| Q |
310 |
gaaagacacatttaactgcacgagcaaacattttatctaaaccttgagtaagatcatgaataaagctatgtgtgctt |
386 |
Q |
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| T |
11025920 |
gaaagacacatttaactgcacgagcaaacattttatctaaaccttgagtaagatcatgaataaagctatgtgtgctt |
11025996 |
T |
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Target: chr2 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 213 - 375
Target Start/End: Complemental strand, 17725208 - 17725046
Alignment:
| Q |
213 |
ggtgtatcctcaaagaatgtgacatcaacaaacatgtagaagctatgcgttgatggacaatagcacttatatcctttctaaactcttgaattgctgagaa |
312 |
Q |
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| T |
17725208 |
ggtgtatcctcaaagaatgtgacatcagcagacatgtagaagcgatgtgtggagggacaatagcaccgatatcctttttgaactcttgaatagcctagaa |
17725109 |
T |
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| Q |
313 |
agacacatttaactgcacgagcaaacattttatctaaaccttgagtaagatcatgaataaagc |
375 |
Q |
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| T |
17725108 |
agacacatttaattgcacgagcacacaatttatctaaacctggagtaagatcatgaacaaagc |
17725046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 215 - 375
Target Start/End: Complemental strand, 13039811 - 13039651
Alignment:
| Q |
215 |
tgtatcctcaaagaatgtgacatcaacaaacatgtagaagctatgcgttgatggacaatagcacttatatcctttctaaactcttgaattgctgagaaag |
314 |
Q |
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||||||||||||||||||||||||| || |||||||||||| ||| || || |||||||||||| ||||||||| | ||||||||||| || |||||| |
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| T |
13039811 |
tgtatcctcaaagaatgtgacatcagcagacatgtagaagcgatgtgtggagggacaatagcaccgatatcctttttgaactcttgaatagcctagaaag |
13039712 |
T |
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| Q |
315 |
acacatttaactgcacgagcaaacattttatctaaaccttgagtaagatcatgaataaagc |
375 |
Q |
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| T |
13039711 |
acacatttaattttacgagcacacaatttatctaaacctggagtaagatcatgaacaaagc |
13039651 |
T |
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