View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14716_low_8 (Length: 348)

Name: NF14716_low_8
Description: NF14716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14716_low_8
NF14716_low_8
[»] chr5 (13 HSPs)
chr5 (17-331)||(9837936-9838250)
chr5 (48-309)||(10594067-10594328)
chr5 (20-245)||(19607476-19607701)
chr5 (33-242)||(10603129-10603338)
chr5 (43-242)||(10590061-10590260)
chr5 (43-229)||(10579396-10579582)
chr5 (191-307)||(10557231-10557347)
chr5 (50-127)||(10610201-10610278)
chr5 (255-307)||(7191313-7191365)
chr5 (263-310)||(10549101-10549148)
chr5 (33-164)||(10599542-10599673)
chr5 (262-301)||(10764950-10764989)
chr5 (50-110)||(10563535-10563595)
[»] chr6 (1 HSPs)
chr6 (29-265)||(24352350-24352586)


Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 331
Target Start/End: Original strand, 9837936 - 9838250
Alignment:
Q  17 atggtttccactaatgtcaaatgatgtcaaagtagaagcatttacaatggaagttgggattgaacctaagatttgattccctcctatttcaaaagatttg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |    
T  9837936 atggtttccactaatgtcaaatgatgtcaaagtagaagcatttacaatggaagttgggattgaacctaagattttattccctcctatttcaaaagatcgg 9838035  T
Q  117 agattagggagagtttggaacatatttgatggaagagagccactaaagcgattatctgctgttgagatcaatgtaagagatgacatattgtagagacaag 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9838036 agattagggagagtttggaacatatttgatggaagagagccactaaagtgattatctgctgttgagatcaatgtaagagatgacatattgtagagacaag 9838135  T
Q  217 gtggaaatgtacctgatagtttgttgtgagtcactgttattattatcaagttttttaggcgacatatttctcgtggaatatctccctctaaattattaaa 316  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9838136 gtggaaatgtacctgatagtttgttgtcagtcactgttattattatcaagttttttaggcgacatatttctcgtggaatatctccctctaaattattata 9838235  T
Q  317 aacaaccccaaaact 331  Q
    |||||||||||||||    
T  9838236 aacaaccccaaaact 9838250  T

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Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 48 - 309
Target Start/End: Complemental strand, 10594328 - 10594067
Alignment:
Q  48 gtagaagcatttacaatggaagttgggattgaacctaagatttgattccctcctatttcaaaagatttgagattagggagagtttggaacatatttgatg 147  Q
    |||||||| ||| |||||||| | ||||||  |||||| || |||||||| ||||||||||||  || |||||| ||||||||||||||||| |  | ||    
T  10594328 gtagaagcgtttgcaatggaaatagggattttacctaacatctgattcccgcctatttcaaaaacttggagattggggagagtttggaacatgtcgggtg 10594229  T
Q  148 gaagagagccactaaagcgattatctgctgttgagatcaatgtaagagatgacatattgtagagacaaggtggaaatgtacctgatagtttgttgtgagt 247  Q
    ||||||||||||  |||| |||  |||  | ||||||    |||||||||| ||||||||  |||||||||||||||||||| ||||| |||||   ||     
T  10594228 gaagagagccaccgaagctatttgctggggctgagatgccagtaagagatgtcatattgtgaagacaaggtggaaatgtaccagataggttgttcacagg 10594129  T
Q  248 cactgttattattatcaagttttttaggcgacatatttctcgtggaatatctccctctaaat 309  Q
    || |   |||||| |||||||||| ||  ||||||||||| |||||||||| ||||||||||    
T  10594128 cagtaacattattgtcaagtttttaagatgacatatttcttgtggaatatcaccctctaaat 10594067  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 245
Target Start/End: Original strand, 19607476 - 19607701
Alignment:
Q  20 gtttccactaatgtcaaatgatgtcaaagtagaagcatttacaatggaagttgggattgaacctaagatttgattccctcctatttcaaaagatttgaga 119  Q
    |||| |||||||  ||||||||||||| | |||| |||||  ||||||||| || |||| |||| | ||||||||||| || ||| | |||| ||  |||    
T  19607476 gttttcactaataacaaatgatgtcaaggaagaaccatttgtaatggaagtaggtattggacctgatatttgattcccaccaattgctaaagtttgaaga 19607575  T
Q  120 ttagggagagtttggaacatatt-tgatggaagagagccactaaagcgattatctgctgttgagatcaatgtaagagatgacatattgtagagacaaggt 218  Q
    ||  ||||||| | |||||| || ||| |||||||||||| ||||| ||||| |||| | ||| ||||  |||||||||||||||||| | |||||||      
T  19607576 ttgcggagagtattgaacatgttatga-ggaagagagccattaaagtgattagctgcagctgatatcatagtaagagatgacatattgaaaagacaagaa 19607674  T
Q  219 ggaaatgtacctgatagtttgttgtga 245  Q
    ||||||||||| |||| ||||||||||    
T  19607675 ggaaatgtaccagataatttgttgtga 19607701  T

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Target: chr5; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 33 - 242
Target Start/End: Complemental strand, 10603338 - 10603129
Alignment:
Q  33 tcaaatgatgtcaaagtagaagcatttacaatggaagttgggattgaacctaagatttgattccctcctatttcaaaagatttgagattagggagagttt 132  Q
    |||||| ||||||||| |||||||||   ||| ||||| ||||||| |||||||| ||||||   ||| | |  |||| ||| |||||| |||||||| |    
T  10603338 tcaaataatgtcaaagaagaagcattcgaaattgaagtggggattggacctaagaattgatttgatccaactgtaaaatattggagattggggagagtgt 10603239  T
Q  133 ggaacatatttgatggaagagagccactaaagcgattatctgctgttgagatcaatgtaagagatgacatattgtagagacaaggtggaaatgtacctga 232  Q
    |||||||||| | |||||||||||||||||||| |||  ||||   |||||||| |  |||||||| |||||| || |||||||  ||||||||||| ||    
T  10603238 ggaacatattgggtggaagagagccactaaagctattcactgcaactgagatcacttgaagagatgtcatattataaagacaagaaggaaatgtaccaga 10603139  T
Q  233 tagtttgttg 242  Q
     | |||||||    
T  10603138 caatttgttg 10603129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 43 - 242
Target Start/End: Original strand, 10590061 - 10590260
Alignment:
Q  43 tcaaagtagaagcatttacaatggaagttgggattgaacctaagatttgattccctcctatttcaaaagatttgagattagggagagtttggaacatatt 142  Q
    |||||||| |||||||| |||||||||||||||||| |||  ||| |||||| ||||| ||| || |  | | ||| ||||||||||| | |||||||||    
T  10590061 tcaaagtataagcatttgcaatggaagttgggattggaccagagaattgatttcctccaattccatagaaatagaggttagggagagtgttgaacatatt 10590160  T
Q  143 tgatggaagagagccactaaagcgattatctgctgttgagatcaatgtaagagatgacatattgtagagacaaggtggaaatgtacctgatagtttgttg 242  Q
     |  ||||||||||||||||||| |||  ||||   |||||||   ||||||||||||||||| || |||||||   |||||||||| || | |||||||    
T  10590161 gggcggaagagagccactaaagctattcgctgcaactgagatccccgtaagagatgacatattataaagacaagaaagaaatgtaccagacaatttgttg 10590260  T

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Target: chr5; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 43 - 229
Target Start/End: Complemental strand, 10579582 - 10579396
Alignment:
Q  43 tcaaagtagaagcatttacaatggaagttgggattgaacctaagatttgattccctcctatttcaaaagatttgagattagggagagtttggaacatatt 142  Q
    |||||||| |||||||| |||||||||||||||||| |||  ||| |||||| ||||| ||| || |  | | ||| ||||||||||| | |||||||||    
T  10579582 tcaaagtataagcatttgcaatggaagttgggattggaccagagaattgatttcctccaattccatagaaatagaggttagggagagtgttgaacatatt 10579483  T
Q  143 tgatggaagagagccactaaagcgattatctgctgttgagatcaatgtaagagatgacatattgtagagacaaggtggaaatgtacc 229  Q
     | ||||||||| |||||||||| |||  || |   |||||||   ||||||||||||||||| || |||||||   ||||||||||    
T  10579482 gggtggaagagaaccactaaagctattcgcttcaactgagatccccgtaagagatgacatattataaagacaagaaagaaatgtacc 10579396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 307
Target Start/End: Complemental strand, 10557347 - 10557231
Alignment:
Q  191 aagagatgacatattgtagagacaaggtggaaatgtacctgatagtttgttgtgagtcactgttattattatcaagttttttaggcgacatatttctcgt 290  Q
    |||||||||||| ||||| ||||| |  |||| |||||| |||||||||||| |   || || |||| |  |||||| ||||||||||||||||||| |     
T  10557347 aagagatgacatgttgtaaagacatgaaggaactgtaccagatagtttgttgagccccaatgctattttagtcaagtgttttaggcgacatatttcttgg 10557248  T
Q  291 ggaatatctccctctaa 307  Q
    |||||||||||||||||    
T  10557247 ggaatatctccctctaa 10557231  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 10610278 - 10610201
Alignment:
Q  50 agaagcatttacaatggaagttgggattgaacctaagatttgattccctcctatttcaaaagatttgagattagggag 127  Q
    |||||||||| ||||||||   ||||||| |||| ||| |||||| |||||   ||||||||||||||||||||||||    
T  10610278 agaagcatttgcaatggaaacagggattggacctgagaattgatttcctccaggttcaaaagatttgagattagggag 10610201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 7191365 - 7191313
Alignment:
Q  255 attattatcaagttttttaggcgacatatttctcgtggaatatctccctctaa 307  Q
    |||||| |||||||||| ||||  ||||||||||||||||| |||||||||||    
T  7191365 attattgtcaagtttttgaggctgcatatttctcgtggaatgtctccctctaa 7191313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 10549148 - 10549101
Alignment:
Q  263 caagttttttaggcgacatatttctcgtggaatatctccctctaaatt 310  Q
    ||||||||| || |||||||||||| |||||||||||||||| |||||    
T  10549148 caagtttttgagacgacatatttcttgtggaatatctccctccaaatt 10549101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 10599673 - 10599542
Alignment:
Q  33 tcaaatgatgtcaaagtagaagcatttacaatggaagttgggattgaacctaagatttgattccctcctatttcaaaagatttgagattagggagagttt 132  Q
    |||||| ||||||||| ||||||||||  ||| ||||| ||||||| |||| ||| || |||   ||| |    |||| ||| |||||| |||||||| |    
T  10599673 tcaaataatgtcaaagaagaagcatttgaaattgaagtagggattggacctgagaatttatttgatccgaccgtaaaatattggagattggggagagtgt 10599574  T
Q  133 ggaacatatttgatggaagagagccactaaag 164  Q
     ||||||||| | |||||||||||||||||||    
T  10599573 agaacatattgggtggaagagagccactaaag 10599542  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 301
Target Start/End: Original strand, 10764950 - 10764989
Alignment:
Q  262 tcaagttttttaggcgacatatttctcgtggaatatctcc 301  Q
    |||||||||| ||||||||||||||| |||||||||||||    
T  10764950 tcaagtttttgaggcgacatatttcttgtggaatatctcc 10764989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 10563595 - 10563535
Alignment:
Q  50 agaagcatttacaatggaagttgggattgaacctaagatttgattccctcctatttcaaaa 110  Q
    ||||||||||||||||||| | ||||||| |||| ||| ||||||  |||| |||||||||    
T  10563595 agaagcatttacaatggaaatagggattggacctgagaattgatttgctccaatttcaaaa 10563535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 29 - 265
Target Start/End: Complemental strand, 24352586 - 24352350
Alignment:
Q  29 aatgtcaaatgatgtcaaagtagaagcatttacaatggaagttgggattgaacctaagatttgattccctcctatttcaaaagatttgagattagggaga 128  Q
    |||||||||| |||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||| | |||||||||||||| || |||||| |||    
T  24352586 aatgtcaaataatgtcaaaatagaagcattttcaatggaagttgggattgaaccaaagatttgattcccgcgtatttcaaaagattggatattaggaaga 24352487  T
Q  129 gtttggaacatatttgatggaagagagccactaaagcgattatctgctgttgagatcaatgtaagagatgacatattgtagagacaaggtggaaatgtac 228  Q
    |||||||||||||||||| |||||||||| ||||||||||| ||||| |||||||||||  ||||||| ||||||||||||| ||| |||||||||||||    
T  24352486 gtttggaacatatttgattgaagagagccgctaaagcgattctctgcagttgagatcaaaataagagacgacatattgtagaaacacggtggaaatgtac 24352387  T
Q  229 ctgatagtttgttgtgagtcactgttattattatcaa 265  Q
    |||||| | |||||  || ||| ||||||||| ||||    
T  24352386 ctgataatctgttggcagccaccgttattattttcaa 24352350  T

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