View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14717_high_3 (Length: 432)
Name: NF14717_high_3
Description: NF14717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14717_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 12 - 373
Target Start/End: Original strand, 30970755 - 30971116
Alignment:
| Q |
12 |
atcataattaatcaatcaacaattcaagctgagtctaaatgcactacaaagtcggtctttgataactaaaagcggaatggaacataacatatacatttga |
111 |
Q |
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| T |
30970755 |
atcataattaatcaatcaacaattcaagctgagtctaaatgcactacaaagtcggtctttgataactaaaagcggaacggaacataacatacacatttga |
30970854 |
T |
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| Q |
112 |
gtttgattttgatacactgtcaacaaattactctcaattacatatgtatgactttataagtaattatgattaaattcaaatactttttaattatatg-tt |
210 |
Q |
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| T |
30970855 |
gtttgattttgatacactgtcaacaaattactctcaattacatatgtatgactttataagtaattatgattaaattcaaatactttttaattatatgatt |
30970954 |
T |
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| Q |
211 |
attaccattaatttaaactataaaaaatctttacattcacgacttgtaacagcgacaaacaaccaagcgatatcctactaagtgcggtcagcgccataat |
310 |
Q |
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| T |
30970955 |
attaccattaatttaaactataaaaaatctttacattcacgacttgtaacagcgacaaacaaccaagcgatatcctactaagtgcggtcagcgccataat |
30971054 |
T |
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| Q |
311 |
gtactatcattcacaatgtttgtatatatgaattaaatcctaaagtttttgttatatggtcaa |
373 |
Q |
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| T |
30971055 |
gtactatcattcacaat-attgtatatatgaattaaatcctaaagtttttgttatatggtcaa |
30971116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 167
Target Start/End: Original strand, 6893730 - 6893794
Alignment:
| Q |
101 |
tatacatttgagtttgattttgatacactgtcaacaaattactctcaattacatatgtatgacttta |
167 |
Q |
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| T |
6893730 |
tataaatttgagtttaattttgatacattgtcaacaaattacagtcaat--catatgtgtgacttta |
6893794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 6468730 - 6468682
Alignment:
| Q |
152 |
catatgtatgactttataagtaattatgattaaattcaaatacttttta |
200 |
Q |
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| T |
6468730 |
catatgtatgactttagaagtaattaagattaaagtcaaacagttttta |
6468682 |
T |
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