View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14717_low_1 (Length: 572)

Name: NF14717_low_1
Description: NF14717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14717_low_1
NF14717_low_1
[»] chr2 (2 HSPs)
chr2 (4-558)||(42959149-42959712)
chr2 (21-73)||(27972020-27972072)
[»] chr7 (7 HSPs)
chr7 (219-340)||(42771101-42771220)
chr7 (21-105)||(42770874-42770954)
chr7 (457-527)||(29598016-29598087)
chr7 (126-173)||(42771030-42771077)
chr7 (457-503)||(9878173-9878219)
chr7 (126-174)||(42770962-42771010)
chr7 (425-453)||(42771297-42771325)
[»] chr4 (1 HSPs)
chr4 (21-73)||(807480-807532)
[»] chr5 (1 HSPs)
chr5 (464-527)||(33689983-33690047)


Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 4 - 558
Target Start/End: Complemental strand, 42959712 - 42959149
Alignment:
Q  4 aggtacatgggagtgaagattttaagagacaggttgggaaaacttgctggtgtttgaagacaagtatgtatgtagtgtgatagttgaggatcttttcaag 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  42959712 aggtacatgggagtgaagattttaagagacaggttgggaaaacttgctggtgtttgaagacaagtatgtatgtagtgtgatagttgaggatcttctcaag 42959613  T
Q  104 aaaaatgaaaagaacnnnnnnngtgttgctagaagactagattattattagcttgagttaagttagtgcatcttgnnnnnnngttaattgtgagtgaaga 203  Q
    ||||||||||| |||       ||||||||||||||||||| |||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  42959612 aaaaatgaaaaaaacaaagaaagtgttgctagaagactagagtattattagcttgagttaagttagtgcatcttgtttttttgttaattgtgagtgaaga 42959513  T
Q  204 gtgattattaaacaatgatgaaagttttggttttagaagtaaaaaatgtaactcttcatggacgtgcatgcttaaactttgacccatctatttgtaatag 303  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42959512 gtgattattaaacaacgatgaaagttttggttttagaagtaaaaaatgtaactcttcatggacgtgcatgcttaaactttgacccatctatttgtaatag 42959413  T
Q  304 tctctattgtagtcctcacggttattgtttaattattagtatcattttatcatgttag-----gnnnnnnnnnttgc----cgtgtgaaaaccagtttta 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||                |||    |||||||||||||||||||    
T  42959412 tctctattgtagtcctcacggttattgtttaattattagtatcattttatcatcttagaaagaaagaaaaaaaatgccgtacgtgtgaaaaccagtttta 42959313  T
Q  395 acatgtgtaattaagtgcatgacatatagtagtagatgtgttagtcttgcctttctcttgtaagagtataagagtatttatgtgggagatagctatagag 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||    
T  42959312 acatgtgtaattaagtgcatgacatatagtagtagatgtgttagtcttgcctttctcttgtaagagtataaaaatatttatgtgggagatagccatagag 42959213  T
Q  495 actcatagtatgatgaattagattgataaaagaataagaataagtcaatgaacacgatcaatct 558  Q
    | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42959212 attcataatatgatgaattagattgataaaagaataagaataagtcaatgaacacgatcaatct 42959149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 27972072 - 27972020
Alignment:
Q  21 gattttaagagacaggttgggaaaacttgctggtgtttgaagacaagtatgta 73  Q
    ||||| |||||| |||||||||||| |||||||||||||||||||||||||||    
T  27972072 gatttcaagagataggttgggaaaatttgctggtgtttgaagacaagtatgta 27972020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 219 - 340
Target Start/End: Original strand, 42771101 - 42771220
Alignment:
Q  219 tgatgaaagttttggtttta--gaagtaaaaaatgtaactcttcatggacgtgcatgcttaaactttgacccatctatttgtaatagtctctattgtagt 316  Q
    ||||||||||||||||||||   ||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    ||||||||| ||||    
T  42771101 tgatgaaagttttggttttaagaaacaaaaaaatgtaactcttcatggacgtgaatgcttaaactttgacccatctatttgt----gtctctattatagt 42771196  T
Q  317 cctcacggttattgtttaattatt 340  Q
    |||||| |||||||||||||||||    
T  42771197 cctcacagttattgtttaattatt 42771220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 42770874 - 42770954
Alignment:
Q  21 gattttaagagacaggttgggaaaacttgctggtgtttgaagacaagtatgtatgtagtgtgatagttgaggatcttttcaagaa 105  Q
    ||||| |||||| |||||||||||| |||| |||||||||||||||    ||||||||||||||||||| |||| || |||||||    
T  42770874 gatttcaagagataggttgggaaaatttgcaggtgtttgaagacaa----gtatgtagtgtgatagttgtggatgttctcaagaa 42770954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 457 - 527
Target Start/End: Original strand, 29598016 - 29598087
Alignment:
Q  457 agagtataagagtatttatgtgggagatagctatagagactcatagtatgatgaattaga-ttgataaaaga 527  Q
    |||| ||||||||||| |||||||||||| | ||||||||||||||||  ||||| |||| |||||||||||    
T  29598016 agagcataagagtattcatgtgggagatacccatagagactcatagtagaatgaactagatttgataaaaga 29598087  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 42771030 - 42771077
Alignment:
Q  126 gtgttgctagaagactagattattattagcttgagttaagttagtgca 173  Q
    |||||||||||||||||||  |||||||| || |||||||||||||||    
T  42771030 gtgttgctagaagactagagcattattagtttaagttaagttagtgca 42771077  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 457 - 503
Target Start/End: Original strand, 9878173 - 9878219
Alignment:
Q  457 agagtataagagtatttatgtgggagatagctatagagactcatagt 503  Q
    |||| |||| |||||| |||||||||||| |||||||||||||||||    
T  9878173 agagcataatagtattcatgtgggagatatctatagagactcatagt 9878219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 42770962 - 42771010
Alignment:
Q  126 gtgttgctagaagactagattattattagcttgagttaagttagtgcat 174  Q
    |||||| ||||||||||||  |||||||| || ||||||||||||||||    
T  42770962 gtgttgttagaagactagagcattattagtttaagttaagttagtgcat 42771010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 425 - 453
Target Start/End: Original strand, 42771297 - 42771325
Alignment:
Q  425 agtagatgtgttagtcttgcctttctctt 453  Q
    |||||||||||||||||||||||||||||    
T  42771297 agtagatgtgttagtcttgcctttctctt 42771325  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 807480 - 807532
Alignment:
Q  21 gattttaagagacaggttgggaaaacttgctggtgtttgaagacaagtatgta 73  Q
    ||||| |||||| |||||||||||| |||||||||||||||||||||||||||    
T  807480 gatttcaagagataggttgggaaaatttgctggtgtttgaagacaagtatgta 807532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 464 - 527
Target Start/End: Complemental strand, 33690047 - 33689983
Alignment:
Q  464 aagagtatttatgtgggagatagctatagagactcatagtatgatgaattaga-ttgataaaaga 527  Q
    ||||||||| |||||||||||| | ||||||||||||| ||   ||||||||| |||||||||||    
T  33690047 aagagtattcatgtgggagatacccatagagactcataatagagtgaattagatttgataaaaga 33689983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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