View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14717_low_2 (Length: 551)
Name: NF14717_low_2
Description: NF14717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14717_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 269 - 517
Target Start/End: Complemental strand, 28692934 - 28692686
Alignment:
| Q |
269 |
tatagtactaatcttattttaatatatgagcatttaaaacaaaaggagtggaagaatcaatcccaattaaatggagttagagcaagcaaaggaagagttg |
368 |
Q |
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| T |
28692934 |
tatagaactaatcttattttaatttatgagcatttaaaacaaaaggagtggaagaatcaatcacaattaaatggagttagagcaagcaaaggaagagttg |
28692835 |
T |
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| Q |
369 |
gagatgcttgaaaccctttaccctaatcaacatgactatctcaaacatgaactgaggtctttcatctctcatcttcaaaactcttattcctattcccacc |
468 |
Q |
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| T |
28692834 |
gagatgcttgaaaccctttaccctaatcaacatgactatctcaaacatgaacttaggtctttcatctctcatcttcaaaactcttattcctattctcacc |
28692735 |
T |
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| Q |
469 |
cccttccacaaaacaacacctccctcactgctttcttagattctgaagg |
517 |
Q |
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| T |
28692734 |
cccttccacaaaacaacacctccctcactgctttcttagatactgaagg |
28692686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 28693194 - 28693013
Alignment:
| Q |
18 |
agatacgtataatccctggaattaatgtctagtcctatttggcactgaccaaccattcaattctccaccaaatacgaacaatgaataaaatcaaacaaac |
117 |
Q |
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| T |
28693194 |
agatacgtataatccctggaattaatgtctagtcctatttggcactgaccaaccattcaattctccaccaaatacgaacaatgaataaaatcaaacaaac |
28693095 |
T |
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| Q |
118 |
gttggaaacctaaacaaaaacagacataactttacaacgtctaaaatcccaacgcccaataacccaatccaatgaaatgatg |
199 |
Q |
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| T |
28693094 |
gttggaaacctaaacaaaaacagacataactttacaacgtctaaaatcccaacgcccaataacccaatccaatgaaatgatg |
28693013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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